Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P03
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   198   6e-52
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    29   0.65 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.5  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   3.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   4.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.1  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  198 bits (484), Expect = 6e-52
 Identities = 97/185 (52%), Positives = 133/185 (71%), Gaps = 2/185 (1%)
 Frame = +2

Query: 80  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 253
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 254 MPKLKAFQKIQIRLVRELXKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 433
            P LKAF K Q RL REL KKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 434 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVXLDXNQQTTIEHKVDTFQSVYKXLTGREV 613
           ++AILED+VFP EI+GKR R   DG + IKV LD     T+++K+ +F SVY  LTG+ V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183

Query: 614 TFEFP 628
           TFEFP
Sbjct: 184 TFEFP 188


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 26  GNS*DLLFPSRKVVKMSTKIIKASGAEADSFETSISQALVEL-ETNSDLKAQLREL-YIT 199
           GN      P R ++K ST +         SFE + S+    L E  S   + +  L ++ 
Sbjct: 53  GNRPSFGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQHVE 112

Query: 200 KAKEIELHNKKSIIIYVPMPKL 265
           K+  IE ++K S  + +  P L
Sbjct: 113 KSARIETYSKLSSFLKIYTPSL 134


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 329  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 508
            H V V D+ +   P       N+Q   R  +L+ + D + +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 509  SQLIKVXLD-XNQQTTIEHKV 568
            S ++   LD  + Q   EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 372 LGLGRILRSPTKTTCLPLNFFXSSRTS 292
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 345  ETVRSCLSPATKPVLLTNKRGHAQ 416
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 400 KEATLKDIDLCVRCYPRGLGLPC 468
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,889
Number of Sequences: 5004
Number of extensions: 48651
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)