Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_P03
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 187 1e-47
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 170 1e-42
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 4e-13
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 3.7
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 6.4
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 6.4
03_02_0488 - 8824980-8825267,8825364-8827775 29 6.4
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 187 bits (455), Expect = 1e-47
Identities = 92/185 (49%), Positives = 135/185 (72%), Gaps = 2/185 (1%)
Frame = +2
Query: 80 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 253
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 254 MPKLKAFQKIQIRLVRELXKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 433
KAF+KI +RLVREL KKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 434 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVXLDXNQQTTIEHKVDTFQSVYKXLTGREV 613
+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +VY+ L G++V
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDV 182
Query: 614 TFEFP 628
FE+P
Sbjct: 183 AFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 170 bits (414), Expect = 1e-42
Identities = 85/167 (50%), Positives = 121/167 (72%), Gaps = 2/167 (1%)
Frame = +2
Query: 134 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 307
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 308 XKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 487
KKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 488 IRVKLDGSQLIKVXLDXNQQTTIEHKVDTFQSVYKXLTGREVTFEFP 628
+R LDG +++K+ LD ++ E+K+DTF SVY+ L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.5 bits (170), Expect = 4e-13
Identities = 41/98 (41%), Positives = 62/98 (63%)
Frame = +2
Query: 188 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELXKKFSGKHVVFVGDRKILPK 367
+Y+ ++ N K ++I+V KAF+KI +RLV+EL KKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 368 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 481
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 407 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 523
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 140 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 274
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 140 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 274
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 89 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 265
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 266 KAFQKI 283
+ +++
Sbjct: 359 DSSEEL 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,725,407
Number of Sequences: 37544
Number of extensions: 391713
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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