Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P02
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    53   5e-08
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    52   2e-07

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 26/67 (38%), Positives = 38/67 (56%)
 Frame = +3

Query: 102 KKVLRMKIVXQFTXKDWYDVXXPSMFSXRXVGTTPXSTVPKATXIXSEGLKGRXSELSLA 281
           KK ++ ++V  F+ KDWYD+  P+ F  + VG T  +         ++ LKGR  E+SLA
Sbjct: 13  KKGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRT-AGLKNANDSLKGRILEVSLA 71

Query: 282 DLXADRE 302
           DL  D E
Sbjct: 72  DLQKDEE 78


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 25/67 (37%), Positives = 38/67 (56%)
 Frame = +3

Query: 102 KKVLRMKIVXQFTXKDWYDVXXPSMFSXRXVGTTPXSTVPKATXIXSEGLKGRXSELSLA 281
           KK ++ ++V  F+ K+WYD+  P+ F  + VG T  +         ++ LKGR  E+SLA
Sbjct: 13  KKGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRT-AGLKNANDSLKGRILEVSLA 71

Query: 282 DLXADRE 302
           DL  D E
Sbjct: 72  DLQKDEE 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,362
Number of Sequences: 5004
Number of extensions: 16263
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)