Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P02
         (938 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...    63   5e-10
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...    63   5e-10
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...    63   5e-10
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...    54   4e-07

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score = 63.3 bits (147), Expect = 5e-10
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
 Frame = +3

Query: 102 KKVLRMKIVXQFTXKDWYDVXXPSMFSXRXVGTTPXSTVPKATXIXSEGLKGRXSELSLA 281
           KK  + K+V  F+ KDWYDV  P+MF  R +G T  +   +   I S+ LKGR  E+SLA
Sbjct: 14  KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT-QGQRIASDYLKGRVFEVSLA 72

Query: 282 DLXADREAERSVPXIXIXPXNM-CKXVMCSATSTAXNSPPIXSXAWFXXWXTLIE 443
           DL  D + ERS     +   ++  + V+C+       +    S      W TLIE
Sbjct: 73  DLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMV--KKWQTLIE 125


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score = 63.3 bits (147), Expect = 5e-10
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
 Frame = +3

Query: 102 KKVLRMKIVXQFTXKDWYDVXXPSMFSXRXVGTTPXSTVPKATXIXSEGLKGRXSELSLA 281
           KK  + K+V  F+ KDWYDV  P+MF  R +G T  +   +   I S+ LKGR  E+SLA
Sbjct: 14  KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT-QGQRIASDYLKGRVFEVSLA 72

Query: 282 DLXADREAERSVPXIXIXPXNM-CKXVMCSATSTAXNSPPIXSXAWFXXWXTLIE 443
           DL  D + ERS     +   ++  + V+C+       +    S      W TLIE
Sbjct: 73  DLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMV--KKWQTLIE 125


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score = 63.3 bits (147), Expect = 5e-10
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
 Frame = +3

Query: 102 KKVLRMKIVXQFTXKDWYDVXXPSMFSXRXVGTTPXSTVPKATXIXSEGLKGRXSELSLA 281
           KK  + K+V  F+ KDWYDV  P+MF  R +G T  +   +   I S+ LKGR  E+SLA
Sbjct: 14  KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT-QGQRIASDYLKGRVFEVSLA 72

Query: 282 DLXADREAERSVPXIXIXPXNM-CKXVMCSATSTAXNSPPIXSXAWFXXWXTLIE 443
           DL  D + ERS     +   ++  + V+C+       +    S      W TLIE
Sbjct: 73  DLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMV--KKWQTLIE 125


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
 Frame = +3

Query: 102 KKVLRMKIVXQFTXKDWYDVXXPSMFSXRXVGTTPXSTVPKATXIXSEGLKGRXSELSLA 281
           KK  + K+V  F+ KDWYDV  P+MF  R +G T  +   +   I S+  KGR  E+SL 
Sbjct: 14  KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRT-QGQRIASDYFKGRVFEVSLV 72

Query: 282 -DLXADREAERSVPXIXIXPXNM-CKXVMCSATSTAXNSPPIXSXAWFXXWXTLIE 443
            DL  D + E S     +   ++  + V+C+       +    S      W TLIE
Sbjct: 73  PDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMV--KKWQTLIE 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,260,509
Number of Sequences: 53049
Number of extensions: 183613
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4648779081
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)