Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_P01
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.70 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   8.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 575 PPXPXPPPPXXSXGPP 622
           PP P PPPP  S   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 25.4 bits (53), Expect = 0.70
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 568 PPPPXPXPPPP 600
           PP P P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 847 PPXPAXRPPPP 879
           PP PA  PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 553 PPPXXPPPPXPXPPPP 600
           PP   PPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 846 PPXPRXPXPPP 878
           PP P  P PPP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
 Frame = +1

Query: 736 RPXSXAPHXPPSGXPLXPPKXXPLPPXX--PPPPXXXPXPPXPAXRPP 873
           +P S AP   PS      P   P  P    PP P   P P  P   PP
Sbjct: 15  QPSSGAPGPQPS------PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 790 PKXXPLPPXXPPPPXXXPXPPXPAXRPPP 876
           P   P P   P  P     PP P+  PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGS-PPNPSQGPPP 48



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +1

Query: 766 PSGXPLXPPKXXPLPPXXPPPPXXXPXPPXP 858
           P+G  L P    P+PP  P        PP P
Sbjct: 404 PAGGQLPPSAGAPMPP-IPNMSNMSGMPPLP 433



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 536 PXPPXPPPXXXXXPPXPXPPPPXXSXGPPXPP 631
           P P   P      P    PP P     P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 576  PPPPXPPP 599
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 579  PPPXPPPP 602
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +1

Query: 781 LXPPKXXPLPPXXPPPPXXXPXPPXPAXRPPP 876
           L PP   P+ P   P P     P       PP
Sbjct: 435 LTPPSSNPVSPVPSPDPLDLAIPVRETLILPP 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,057
Number of Sequences: 438
Number of extensions: 10227
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)