Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O24
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.042
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.69 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   7.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 21/78 (26%), Positives = 22/78 (28%)
 Frame = +3

Query: 495 PPXPLPGXXXXXTXXIXTPXXPLXXGPXAPPXXPXXGNPPDXXFXXXXPPDPXSXXXPPP 674
           P  P P            P  P    P A P  P    P         PP P     PP 
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206

Query: 675 XXXPVAXPTPAPXXFWHP 728
              PVA  +  P  F  P
Sbjct: 207 SQAPVANTSSRPSSFAPP 224


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
 Frame = +3

Query: 495  PPXPLP-GXXXXXTXXIXTPXXPLXXGPXAPPXXPXXGNPPDXXFXXXXPPDPXSXXXPP 671
            PP P P G        +  P  P       P   P  G PP        P    S   PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 672  PXXXPVAXPTPAP 710
                  A P P P
Sbjct: 1210 VPPPSTAPPVPTP 1222



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
 Frame = +3

Query: 495  PPXPLPGXXXXXTXXIXTPXXPLXXGPXAPP-XXPXXGNPPDXXFXXXXP-PDPXSXXXP 668
            PP P P               P+     APP   P  G PP        P P P +   P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 669  PPXXXPVAXPTPAP 710
             P     A P PAP
Sbjct: 1229 VPVPTAKAPPVPAP 1242



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
 Frame = +3

Query: 495  PPXPLP-GXXXXXTXXIXTPXXPLXXGPX--------APPXXPXXGNPPDXXFXXXXPPD 647
            PP P P G        +  P  P+  G          APP     G PP        PP 
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171

Query: 648  PXSXXXPPPXXXPVAXPTPAP 710
            P      PP   P A   P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVP 1192



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
 Frame = +3

Query: 549  PXXPLXXGPXAPPXXPXXGNPPDXXFXXXXPPDPXSXXXPPPXXXP-VAXPTPAP 710
            P  PL       P  P    PP        PP P      PP   P  A P P P
Sbjct: 992  PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIP 1046



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/73 (26%), Positives = 20/73 (27%), Gaps = 1/73 (1%)
 Frame = +3

Query: 495  PPXPLPGXXXXXTXXIXTPXXPLXXGPXAPPXXPXXGNPPDXXFXXXXPPDPXSXXXPPP 674
            PP P P               P+     APP        P        PP P      PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151

Query: 675  XXXPV-AXPTPAP 710
               P  A P P P
Sbjct: 1152 VPAPSGAPPVPKP 1164



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
 Frame = +3

Query: 549  PXXPLXXGPXAPPXXPXXGNPPDXXFXXXXPPDPXSXXXPPPXXXPV-AXPTPAP 710
            P  P   G  APP     G PP        PP P      PP   P  A P P P
Sbjct: 1074 PSIPAPSG--APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
 Frame = +3

Query: 549 PXXPLXXGPXAPPXXPXXGN--PPDXXFXXXXPPDPXSXXXPPPXXXPVAXPTPAP 710
           P  P    P APP  P      PP        PP P      PP       P PAP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
 Frame = +3

Query: 495 PPXPLPGXXXXXTXXIXTPXXP--LXXG-PXAPPXXPXXG-NPPDXXFXXXXPPDPXSXX 662
           PP P P            P  P  L  G P APP  P     PP        PP P +  
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 663 XPPPXXXP 686
            PPP   P
Sbjct: 475 APPPAPAP 482



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
 Frame = +3

Query: 546 TPXXPLXXG--PXAPPXXPXXGNPPDXXFXXXXPPDPXSXXXPP--PXXXPVAXPTP 704
           TP  P      P APP  P    P         PP P S    P  P   P A P P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 639 PPDPXSXXXPPPXXXPVAXPTPAP 710
           PP P +   P P   P+  P PAP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP 756


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
 Frame = +3

Query: 582  PPXXPXXGNPPDXXFXXXXPPDPXSXXXPP-----PXXXPVAXPTPAP 710
            PP  P    PP        PP P S   PP     P   P A P P P
Sbjct: 1690 PPVRPQSAAPPQMS-APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 827  PPXTTTRAXXXPXXPPXPPGPPRVXXP 907
            PP         P  PP P GPP    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 839 TTRAXXXPXXPPXPPGPP 892
           T+ A   P  PP PP PP
Sbjct: 935 TSVAGVMPAFPPPPPPPP 952



 Score = 20.6 bits (41), Expect(2) = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 869 PPXPPGPPRV 898
           PP PP PP V
Sbjct: 946 PPPPPPPPLV 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,900
Number of Sequences: 5004
Number of extensions: 12141
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)