Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O23
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   4.7  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   4.7  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   4.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    24   6.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    24   6.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    24   6.6  
AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm rec...    28   8.2  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 734 PPPPPXXXXFXLXPXXXPXXPXXXPPXP 817
           PPPPP    F + P      P   PP P
Sbjct: 611 PPPPPPPQSFGMAPISSAAPPPPPPPPP 638


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 734 PPPPPXXXXFXLXPXXXPXXPXXXPPXP 817
           PPPPP    F + P      P   PP P
Sbjct: 437 PPPPPPPQSFGMAPISSAAPPPPPPPPP 464


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 493 GXXAPPKXKKXXXXGPPPPXXXXPXKXXXXXXXPAP 600
           G   PP  K     GPPPP    P         PAP
Sbjct: 25  GKKKPPPPKSASKMGPPPPAPAPPTAPEATPAAPAP 60


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 24.2 bits (50), Expect(2) = 6.4
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +2

Query: 467 GGRXFPXXGXXXPPXKXKXXXXXGPPPPXXXXXXKXPFXXXXPPPXLFFXXPXXXGXTP 643
           G    P      PP         GPPPP        P     PPP      P   G  P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPP 759



 Score = 22.6 bits (46), Expect(2) = 6.4
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 734 PPPPPXXXXFXLXPXXXPXXPXXXPPXP 817
           PPPPP    F   P   P      P  P
Sbjct: 771 PPPPPPPGGFKGGPPPPPPPGMFAPMAP 798


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 24.2 bits (50), Expect(2) = 6.4
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +2

Query: 467 GGRXFPXXGXXXPPXKXKXXXXXGPPPPXXXXXXKXPFXXXXPPPXLFFXXPXXXGXTP 643
           G    P      PP         GPPPP        P     PPP      P   G  P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPP 759



 Score = 22.6 bits (46), Expect(2) = 6.4
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 734 PPPPPXXXXFXLXPXXXPXXPXXXPPXP 817
           PPPPP    F   P   P      P  P
Sbjct: 771 PPPPPPPGGFKGGPPPPPPPGMFAPMAP 798


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 24.2 bits (50), Expect(2) = 6.6
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +2

Query: 467 GGRXFPXXGXXXPPXKXKXXXXXGPPPPXXXXXXKXPFXXXXPPPXLFFXXPXXXGXTP 643
           G    P      PP         GPPPP        P     PPP      P   G  P
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPP 342



 Score = 22.6 bits (46), Expect(2) = 6.6
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 734 PPPPPXXXXFXLXPXXXPXXPXXXPPXP 817
           PPPPP    F   P   P      P  P
Sbjct: 354 PPPPPPPGGFKGGPPPPPPPGMFAPMAP 381


>AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 211 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 326 NIINVVTFCGI-I*ALSLSESFCFCQ--GVDCWSRADDGVSNPLTHF 195
           N+I   +F GI + ++S++ S  F    G+ CW R D   S+  THF
Sbjct: 197 NVIYWPSFIGIMLDSMSINISLMFSAYFGIKCWLRMDAIFSSSSTHF 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,705
Number of Sequences: 27780
Number of extensions: 188662
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)