Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O22
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.33 
AF067214-9|AAC17004.1|  286|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   7.2  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   7.2  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   7.2  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    28   9.5  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 107 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 262
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>AF067214-9|AAC17004.1|  286|Caenorhabditis elegans Hypothetical
           protein F56C3.1 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 426 KLPPRSEARFHNQIPRMRELPTAMV*TSILNSSVGSS 536
           +LPP+S+A+    I RMR+ P  ++      SSVG+S
Sbjct: 210 QLPPQSDAQLRRHIGRMRDFP-RLLPKQDQQSSVGTS 245


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 165 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 275
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 165 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 275
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 165 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 275
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 411 SDHLQKLPPRSEARFHNQIPRMRELPTAMV*TSILNSSVGSSLPCGENHRVYFQDPQH*V 590
           S +L + P  S +R+ N   R R   T ++ +SI  SS   S    E   VY+ +PQ   
Sbjct: 389 SSNLDRSPSPSRSRYMNS--RDRRKTTTIIPSSIPQSSEYKSAFQREAPAVYYTEPQSTY 446

Query: 591 QPV 599
           +P+
Sbjct: 447 KPL 449


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 411 SDHLQKLPPRSEARFHNQIPRMRELPTAMV*TSILNSSVGSSLPCGENHRVYFQDPQH*V 590
           S +L + P  S +R+ N   R R   T ++ +SI  SS   S    E   VY+ +PQ   
Sbjct: 389 SSNLDRSPSPSRSRYMNS--RDRRKTTTIIPSSIPQSSEYKSAFQREAPAVYYTEPQSTY 446

Query: 591 QPV 599
           +P+
Sbjct: 447 KPL 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,499
Number of Sequences: 27780
Number of extensions: 368245
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)