Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O21
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    96   6e-21
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    63   4e-11
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    51   2e-07
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   5.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.8  

>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 47/111 (42%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
 Frame = +3

Query: 60  EDEVTLPRASINKMIKELVPSVRVAF--ESRELILNCCTEFIHLISSEANEVCNQSNKKT 233
           +DE++LP+A++ KM+ +++P V + F  E+R+L++ CC EFIHL+SSEANE+C +  KKT
Sbjct: 7   DDELSLPKATVQKMVSDILP-VDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKT 65

Query: 234 INAEHVLTALDRLGFSDYTIEA-EAGL*RL*SSGRAKRRRPSXRLEKLGIS 383
           I AEH++ AL+ L F +Y  EA E          +  R + S + E+ G+S
Sbjct: 66  IAAEHIIKALENLEFKEYIAEALEVAAEH--KEQQKNREKKSSKFEQSGVS 114


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = +3

Query: 75  LPRASINKMIKELVP-SVRVAFESRELILNCCTEFIHLISSEANEVCNQSNKKTINAEHV 251
           LP A++ +++K  +P + +++ E+++ + +C +EFI  ++ EA+E C Q  +KTI  E V
Sbjct: 12  LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71

Query: 252 LTALDRLGFSDY 287
           L AL+ LGF +Y
Sbjct: 72  LLALNTLGFENY 83


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +3

Query: 54  SEEDEVTLPRASINKMIKELVPSVR-VAFESRELILNCCTEFIHLISSEANEVCNQSNKK 230
           SE D++ LPR+ I +++K ++P    V  E+ + ++N  T F+  ++S + E+   +N+K
Sbjct: 10  SELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRK 69

Query: 231 TINAEHVLTALDRLGFSDYT 290
            +  + VL ALD + + +++
Sbjct: 70  ILMPQDVLNALDEIEYPEFS 89


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 247 CSALIVFLLL*LHTSLASELIKCMNSVQQFRINSLDSNATRTEGTNSFIILF 92
           CSA+++FL   +H    + L++ +  ++     ++DS   R E   S I +F
Sbjct: 699 CSAIVLFLFSVMHLGAENPLLESIYLLEDMGSRTIDSK-VRLEKLKSAIEIF 749


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 768 PPPLXGGXXXPXXXKXXXGXXXPPPP 845
           P P+ GG   P       G   PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,107
Number of Sequences: 5004
Number of extensions: 36444
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)