Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_O19
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 34 0.13
01_01_0482 + 3535083-3535194,3535301-3535467 33 0.39
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.1
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.1
04_03_0904 + 20717005-20718087 29 3.6
06_03_0696 + 23617687-23617851,23618838-23619536 29 4.7
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897... 29 4.7
12_02_1174 - 26696869-26698191 29 6.3
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 8.3
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 28 8.3
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +2
Query: 701 PPPXEKXXGAAXLXTXKXTPPPXPPXXFPPXKXXXFXTTTPPP 829
PPP K A PPP PP PP + T PPP
Sbjct: 233 PPPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPP 275
>01_01_0482 + 3535083-3535194,3535301-3535467
Length = 92
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +2
Query: 689 GGXTPPPXEKXXGAAXLXT-XKXTPPPXPPXXFPPXKXXXFXTTTPPP 829
G PPP + G L T + TPPP P PP PPP
Sbjct: 43 GDAPPPPPQHGAGRRLLSTQNQVTPPPPAPVSSPPIGPAPTLLPPPPP 90
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 701 PPPXEKXXGAAXLXTXKXTPPPXPPXXFPPXKXXXFXTTTPPP 829
PPP G + PPP PP PP + ++ PPP
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPPP---PPLPQSNYASSQPPP 587
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 701 PPPXEKXXGAAXLXTX--KXTPPPXPPXXFPPXKXXXFXTTTPPP 829
PPP K AA K PPP PP PP PPP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +2
Query: 701 PPPXEKXXGAAXLXTXKXTPPPXPPXXFPPXKXXXFXTTTPPP 829
PPP A K PPP P PP + PPP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 704 PPXEKXXGAAXLXTXKXTPPPXPPXXFPPXKXXXFXTTTPPP 829
PP T K TPPP P PP T TP P
Sbjct: 75 PPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTP 116
>06_03_0696 + 23617687-23617851,23618838-23619536
Length = 287
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 749 KXTPPPXPPXXFPPXKXXXFXTTTPPP 829
K TPPP PP PP PPP
Sbjct: 74 KQTPPPPPPPPPPPSPPATHDVGQPPP 100
>05_07_0286 -
28988294-28988383,28988486-28989007,28989117-28989758,
28990554-28990597,28990836-28991016
Length = 492
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +2
Query: 689 GGXTP-PPXEKXXGAAXLXTXKXTPPPXPPXXFPP 790
GG P PP A L PPP P FPP
Sbjct: 323 GGDAPAPPARPVADGAVLPAPMQQPPPATPPFFPP 357
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 701 PPPXEKXXGAAXLXTXKXTPPPXPPXXFPPXKXXXFXTTTPPP 829
PPP + A P P PP PP + TPPP
Sbjct: 275 PPPEDYWSPTAVTPPEPTKPKPPPPSPPPPPQQPSQRYWTPPP 317
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 758 PPPXPPXXFPPXKXXXFXTTTPPPXXVXXGXXP 856
PPP PP PP PPP + G P
Sbjct: 354 PPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPP 386
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +2
Query: 755 TPPPXPPXXFPPXKXXXF-XTTTPPPXXVXXG 847
TPPP PP PP T TPPP G
Sbjct: 74 TPPPTPPSPPPPPPPPPTNGTLTPPPSSAPSG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,163
Number of Sequences: 37544
Number of extensions: 321138
Number of successful extensions: 1519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -