Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O16
         (1094 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0083 + 20753191-20754480                                         29   6.5  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    29   6.5  

>09_06_0083 + 20753191-20754480
          Length = 429

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 736 PECXVLPXPPNXLXXSXLICPNQPIYSXPP 825
           P    LP PP     +  + P+QP+YS PP
Sbjct: 254 PATPDLPLPPPPPADTYPVSPDQPLYSSPP 283


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 18/76 (23%), Positives = 26/76 (34%)
 Frame = -2

Query: 760 GXVKPXIQGXFXEPETPFXXTXXXPGEPSXLXLYPXIPTTXGKLNGXESPGRCPPNLGXG 581
           G   P  QG F     P          PS       +P + G     + P R PP+L   
Sbjct: 125 GTAPPPSQGPFGTAPPPSQGPFGTAPPPSQGPFAASVPPSQGPFASAQPPFRPPPSLVQS 184

Query: 580 SXSNSQALGXFFIGPP 533
             ++  A    ++ PP
Sbjct: 185 PTASGMAPPSAYVRPP 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,920,972
Number of Sequences: 37544
Number of extensions: 363941
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3281292076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)