Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O14
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   6.3  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   6.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.3  
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    26   8.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   8.3  
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    26   8.3  

>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 294 RKKPPHTXPLNLKHKMNPIXLFVNLFYXSFIMVTNKAIASQISQIKHFFHCILVVVXPNS 115
           +K   +   L+L    + +  FVN FY S +  +   I  Q +  +  F  IL VV  + 
Sbjct: 96  KKSKNYLSALSLLLSNSNVQPFVNKFYTSTVFPSFLQILKQYNVAQEEFFAILCVVCDSL 155

Query: 114 SMY 106
            +Y
Sbjct: 156 EIY 158


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 736 RRNRYPVSGQGSGPGEAHEGGFQGETP 656
           RR     SG  SGP  +  GGF+  TP
Sbjct: 595 RRPTNSSSGYSSGPSYSGYGGFESRTP 621


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 664 PPGSLPRAPXLVPTPGRLPDTCSAFLPSGSVALSHTSP 777
           PP S   A  L   P  LP   S+ LP+G+++ +   P
Sbjct: 166 PPSSFITAKQLSRLPTPLPPPSSSSLPTGTISTNSFCP 203


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 294 RKKPPHTXPLNLKHKMNPIXLFVNLFY 214
           RKK  +T P  +KHK   + L V  +Y
Sbjct: 80  RKKKTYTTPKKIKHKHKKVELAVLKYY 106


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 633 VSPPLT*AVDFCDARSGGAEPYGKNAQQXRPFLRF 529
           ++PP +  V +C A   G++P      Q +PF+ F
Sbjct: 596 ITPPFSYPVAYCPAIPPGSDPILNFGIQYQPFIPF 630


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 294 RKKPPHTXPLNLKHKMNPIXLFVNLFY 214
           RKK  +T P  +KHK   + L V  +Y
Sbjct: 80  RKKKTYTTPKKIKHKHKKVELAVLKYY 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,307
Number of Sequences: 5004
Number of extensions: 49994
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)