Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_O14
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 33 0.31
06_03_0681 - 23480161-23480775 31 1.6
09_04_0296 + 16461482-16461544,16462087-16463097 30 2.9
11_06_0577 - 25158833-25162864 29 3.8
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959... 29 3.8
04_04_1652 - 35066814-35067659 29 3.8
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 29 3.8
08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991 29 5.0
07_01_1201 - 11419851-11419913,11420090-11420311 29 5.0
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 29 6.6
06_01_0120 - 926226-926289,926821-926887,927122-927170,927257-92... 29 6.6
11_06_0196 + 21144094-21144483 28 8.7
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 28 8.7
08_02_0088 - 12224160-12224173,12224185-12224593,12224657-12226099 28 8.7
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 33.1 bits (72), Expect = 0.31
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 673 SLPR-APXLVPTPGRLPDTCSAFLPSGSV 756
SLP AP L PTPGRLPD +A +G V
Sbjct: 64 SLPDPAPVLSPTPGRLPDAAAAGTAAGGV 92
>06_03_0681 - 23480161-23480775
Length = 204
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 675 PPSCASPGPDPWPLTGYLFR-LSPFGKRGA 761
P S A+ GP P P TG+LF LSP RGA
Sbjct: 122 PSSAAAAGPSPSPSTGFLFNDLSPL--RGA 149
>09_04_0296 + 16461482-16461544,16462087-16463097
Length = 357
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = +3
Query: 510 PXKRAXETVKKAAXAGRFFHXAPPPLNEHHKNRRLKSEVAKPXRTIKIPGVSPWKPPSCA 689
P + E V AA A A PP N K ++ KS P ++ G P PPS +
Sbjct: 164 PPPQQPEDVDAAAAAAA----AAPP-NSKPKKKKKKSRPCFPGARLRPRGTVPPPPPSSS 218
Query: 690 SPGP 701
P P
Sbjct: 219 GPSP 222
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = -1
Query: 829 HSPAWERTTXTXXRYXPXVRYEKAPRFPKGERRNRYPVSGQGSGPGEAHEGGFQGET 659
H P W T T R + K GERR RY V G+ A G +T
Sbjct: 97 HVPTWLSTVPTRHRLAKKIHELKDRVRDVGERRQRYGVVGEIPTKNAASSSGHGSQT 153
>05_07_0163 -
28094574-28094726,28095248-28095382,28095771-28095923,
28096010-28096208,28096312-28096349,28096849-28097020,
28097666-28097788,28097869-28098284
Length = 462
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +3
Query: 543 AAXAGRFFHXAPPPLNEHHKNRRLKSEVAKPXRTIKIPGVSPWKPPSCASPGPDPWP 713
++ A F +PPP HH + L ++ S P AS P PWP
Sbjct: 6 SSAAACFLSPSPPPRPRHHSIKHLACAASRSPSPGPSSSRSLALPSPSASASPWPWP 62
>04_04_1652 - 35066814-35067659
Length = 281
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 667 PGSLPRAPXLVPTPGRLPDTCSAFLP 744
P P P L PTPGRLP + +P
Sbjct: 254 PSPSPSPPPLPPTPGRLPPSFVGMMP 279
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 769 YEKAPRFPKGERRNRYPVSGQGSGPGEAHEGGFQGETPG 653
Y+KA R + R+ S +G PG GGF G PG
Sbjct: 509 YDKAKRKEQSSSRSSGGASPRGGFPGGMPGGGFPGGMPG 547
>08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991
Length = 1165
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +3
Query: 669 WKPPSCAS----PGPDPWPLTGYLFRLSP 743
WK +C PGP WP+ G L +LSP
Sbjct: 660 WKKLNCMRRRLPPGPPRWPIFGNLLQLSP 688
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 619 QRWRN--PTGL*RYQAFPPGSLPRAPXL-VPTPGRLPDT 726
Q+WR+ PTG + +FP G+LP A P P R P T
Sbjct: 27 QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPAT 65
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 178 ITNFTNKAFFSLHSSCGXSKLINVSYHV*SN*PSXKGDPRPRY 50
+ +TN +FF+ HS+C +KLI+ H+ P + +P +
Sbjct: 149 LKRYTNPSFFTSHSACS-TKLIHQRIHMAKQPPKLLLETKPTF 190
>06_01_0120 -
926226-926289,926821-926887,927122-927170,927257-927313,
927826-927897,928145-928236,928331-928403,928870-928944,
929207-929314,929372-929422,929834-929959,930324-930362,
930452-930535,931018-931109,931217-931300,931410-931524
Length = 415
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 730 NRYPVSGQGSGPGEAHEGGFQGETPGIF 647
++Y + G GPG A+EGGF IF
Sbjct: 142 DQYEKASAGGGPGGAYEGGFGNPFEDIF 169
>11_06_0196 + 21144094-21144483
Length = 129
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 615 KSEVAKPXRTIKIPGVSPWKPPSCASPGPDPWP 713
KS VAKP + V+ KPP+ A P PWP
Sbjct: 71 KSAVAKPPAVAEPLAVAVIKPPAAAVAKP-PWP 102
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/89 (21%), Positives = 33/89 (37%)
Frame = +3
Query: 492 TCEPXGPXKRAXETVKKAAXAGRFFHXAPPPLNEHHKNRRLKSEVAKPXRTIKIPGVSPW 671
+ + GP ++ E + RF + PP H K +L +V +I V +
Sbjct: 730 SADQVGPNQKEREDRYQGGIQTRFINKLPPVFAIHLKRSQLTGKVRGHVSFEEILDVGQF 789
Query: 672 KPPSCASPGPDPWPLTGYLFRLSPFGKRG 758
PS + L G + + P + G
Sbjct: 790 MDPSSEDKDNSSYHLVGVIEHIGPSTRSG 818
>08_02_0088 - 12224160-12224173,12224185-12224593,12224657-12226099
Length = 621
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 772 RYEKAPRFPKGERRNRYPVSGQGSGPGEAHEG-GFQGETPGIFIVLXGFATSDLSRRFL 599
R KAP P G RR+ + H+G GFQ E + G A + +SRR L
Sbjct: 203 REGKAPAAPAGNRRSEAKQKAPAEDIDDGHDGLGFQ-EPEVTIATVDGGACAHVSRRSL 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,171,635
Number of Sequences: 37544
Number of extensions: 432674
Number of successful extensions: 1621
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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