Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_O12
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 33 0.40
01_01_0070 - 542603-542686,542803-543441 33 0.40
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 31 1.2
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 30 2.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 3.7
06_03_1310 + 29238644-29240260 29 3.7
04_01_0034 - 401208-402923 29 3.7
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 29 4.9
01_01_0082 + 625198-625719 24 6.4
04_03_0513 - 16681227-16683936,16685572-16685966 29 6.5
01_06_0146 + 26969011-26969995,26970878-26970930 29 6.5
04_04_1125 + 31085106-31085714 28 8.6
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPP 859
P PP P + P RI P P T P PPP GPP
Sbjct: 280 PPPPPPNAPMGMPPRIPPP--PVGGTQPPPPPPPLANGPP 317
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 737 TPNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGP 856
TP PP P+ P P TP +TP P+ PPP P
Sbjct: 81 TPPPPTPKKAPPPPVT-PPPVTPPPVTPPPVSPPPATPPP 119
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPL-PLXPPPXXVGPPG 862
P PP P P + P TP P PPP VGPPG
Sbjct: 26 PPPPPPHPPPPPPLEPAPPSTPQLRGEASPPPPPPPPVGPPG 67
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 740 PNPPXPQXGLSXPX--RISXP*TPXXITPLPLXPPPXXVGPPGXNXXPXQ 883
P PP P ++ P R P P PLP+ PP V PP + P Q
Sbjct: 964 PPPPPPPPNVAPPPFTRQDIPPPPPSPPPLPITQPP-SVPPPPNSPPPLQ 1012
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPPGXNXXP 877
P PP P P + + P P I P P+ PPP P P
Sbjct: 1181 PPPPPPPLPSGPPPQPAPP--PLPIQPPPIPPPPVPSSPSSLGYQP 1224
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 749 PXPQXGLSXPXRISXP*T--PXXITPLPLXPPPXXVGPPG 862
P G S P S P T P + P PL PPP PPG
Sbjct: 430 PPSSHGASPPSSSSSPPTEHPGYVLP-PLTPPPPTTTPPG 468
>04_01_0034 - 401208-402923
Length = 571
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPPGXNXXP 877
P PP PQ + P R P P PL PPP PP P
Sbjct: 307 PPPPPPQQQRAKPSRPPPP-------PPPLDPPPRAAAPPAKCKRP 345
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = +2
Query: 728 LHXTPNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPPGXNXXPXQ 883
+ TP PP PQ P P + P P PP GPPG P Q
Sbjct: 272 MQPTPMPPPPQMSYGYS-----PYPPMMMPPPP--PPEYLYGPPGMRSSPPQ 316
>01_01_0082 + 625198-625719
Length = 173
Score = 23.8 bits (49), Expect(2) = 6.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 811 YYPPPTXPP 837
YYPPP+ PP
Sbjct: 72 YYPPPSPPP 80
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 814 YPPPTXPPXXSGGPPWVXXG 873
YPPPT P PP+ G
Sbjct: 83 YPPPTTPSTNCPPPPYGGGG 102
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 266 QQGLLHKHESLRKFHDDVQGRIPSQESGILDLL 364
Q G+LH+ ESL +D+ G IP QE LD L
Sbjct: 905 QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPP 841
P+PP P + R + P P P P PPP
Sbjct: 86 PSPPLPHDNRTPQPRAAPPPAPAPDQPAPPSPPP 119
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +2
Query: 737 TP-NPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPPGXNXXP 877
TP P P + P P TP TP P PPP P P
Sbjct: 52 TPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPP 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,986,857
Number of Sequences: 37544
Number of extensions: 340741
Number of successful extensions: 1306
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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