Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_O12
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 35 0.34
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 35 0.34
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 35 0.34
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 35 0.34
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 35 0.34
D38024-1|BAA07227.1| 853|Homo sapiens facioscapulohumeral muscu... 32 2.4
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 31 4.2
BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein. 31 4.2
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 31 4.2
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein. 31 4.2
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 31 4.2
D87459-1|BAA13399.2| 567|Homo sapiens KIAA0269 protein. 31 7.4
BC044591-1|AAH44591.1| 559|Homo sapiens WAS protein family, mem... 31 7.4
AL590009-1|CAI12485.1| 559|Homo sapiens WAS protein family, mem... 31 7.4
AF134303-1|AAD33052.1| 559|Homo sapiens Scar1 protein. 31 7.4
AL121919-1|CAI21544.2| 1677|Homo sapiens chromosome 20 open read... 30 9.8
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 35.1 bits (77), Expect = 0.34
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXI-TPLPLXPPPXXVGPP 859
P PP PQ G P P P + PL L PPP GPP
Sbjct: 307 PGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 347
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 35.1 bits (77), Expect = 0.34
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXI-TPLPLXPPPXXVGPP 859
P PP PQ G P P P + PL L PPP GPP
Sbjct: 307 PGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 347
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 35.1 bits (77), Expect = 0.34
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXI-TPLPLXPPPXXVGPP 859
P PP PQ G P P P + PL L PPP GPP
Sbjct: 234 PGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 274
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 35.1 bits (77), Expect = 0.34
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXI-TPLPLXPPPXXVGPP 859
P PP PQ G P P P + PL L PPP GPP
Sbjct: 344 PGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 384
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 35.1 bits (77), Expect = 0.34
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXI-TPLPLXPPPXXVGPP 859
P PP PQ G P P P + PL L PPP GPP
Sbjct: 307 PGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPP 347
>D38024-1|BAA07227.1| 853|Homo sapiens facioscapulohumeral muscular
dystrophy protein.
Length = 853
Score = 32.3 bits (70), Expect = 2.4
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 746 PPXPQXGLSXPXRISXP*TPXXITPLPLXPPP 841
PP P L P R+S P T TP P PPP
Sbjct: 336 PPSPLPPLPLPLRLSGPTTTTATTPPPPPPPP 367
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.5 bits (68), Expect = 4.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 743 NPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPPGXNXXP 877
+PP P+ G + P + P P + +P PPP G PG P
Sbjct: 308 SPPGPKPGFAPPP--APPPPPPPMIGIPPPPPPVGFGSPGTPPPP 350
>BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein.
Length = 600
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLX--PPPXXVGPP 859
P PP PQ L P + P TP P PL PPP PP
Sbjct: 109 PPPPPPQPALPSPPPLVAP-TPSSPPPPPLPPPPPPAMPSPP 149
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.5 bits (68), Expect = 4.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 743 NPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPPGXNXXP 877
+PP P+ G + P + P P + +P PPP G PG P
Sbjct: 308 SPPGPKPGFAPPP--APPPPPPPMIGIPPPPPPVGFGSPGTPPPP 350
>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
Length = 1217
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLX--PPPXXVGPP 859
P PP PQ L P + P TP P PL PPP PP
Sbjct: 654 PPPPPPQPALPSPPPLVAP-TPSSPPPPPLPPPPPPAMPSPP 694
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 31.5 bits (68), Expect = 4.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 743 NPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPPGXNXXP 877
+PP P+ G + P + P P + +P PPP G PG P
Sbjct: 308 SPPGPKPGFAPPP--APPPPPPPMIGIPPPPPPVGFGSPGTPPPP 350
>D87459-1|BAA13399.2| 567|Homo sapiens KIAA0269 protein.
Length = 567
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPP 859
P PP P L P + P P I P L P P + PP
Sbjct: 362 PPPPPPATALQAPA-VPPPPAPLQIAPGVLHPAPPPIAPP 400
>BC044591-1|AAH44591.1| 559|Homo sapiens WAS protein family, member
1 protein.
Length = 559
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPP 859
P PP P L P + P P I P L P P + PP
Sbjct: 354 PPPPPPATALQAPA-VPPPPAPLQIAPGVLHPAPPPIAPP 392
>AL590009-1|CAI12485.1| 559|Homo sapiens WAS protein family, member
1 protein.
Length = 559
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPP 859
P PP P L P + P P I P L P P + PP
Sbjct: 354 PPPPPPATALQAPA-VPPPPAPLQIAPGVLHPAPPPIAPP 392
>AF134303-1|AAD33052.1| 559|Homo sapiens Scar1 protein.
Length = 559
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 740 PNPPXPQXGLSXPXRISXP*TPXXITPLPLXPPPXXVGPP 859
P PP P L P + P P I P L P P + PP
Sbjct: 354 PPPPPPATALQAPA-VPPPPAPLQIAPGVLHPAPPPIAPP 392
>AL121919-1|CAI21544.2| 1677|Homo sapiens chromosome 20 open reading
frame 174 protein.
Length = 1677
Score = 30.3 bits (65), Expect = 9.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 393 ARXXLPSFFRKRSRIPDSWEGIRPC 319
+R P++ R+RSR P + EG++PC
Sbjct: 1307 SRLRTPTWVRRRSRHPPALEGLKPC 1331
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,523,328
Number of Sequences: 237096
Number of extensions: 1809620
Number of successful extensions: 5962
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5625
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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