Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O07
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    51   2e-07
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   4.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   4.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   7.9  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 36/127 (28%), Positives = 56/127 (44%)
 Frame = +1

Query: 283 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 462
           L +E ++ LP  V+RRI  LR LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 463 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDQAIEPPMDPNVKGIPDFW 642
            G  EP ++E         ++ E A   +    T  E KK +         + KGIP+FW
Sbjct: 123 RGADEPTEEE--------IKKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168

Query: 643 YNIFRXV 663
               + V
Sbjct: 169 LTAMKNV 175


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 267 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH*GQVL 386
           GHHK+P CR+  +      S N R E   + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 547 QNAAITEGEEKKDDQAIEPPMDPNVKGIP 633
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 151 ERSTVPIFNISLSPPSKFSEKKDGDVTRSANDLKNQILRN 32
           ERS  P  ++S+S PS F +K+DG      ND K     N
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG--LSLNNDFKKPACNN 582


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -1

Query: 621 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 469
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,985
Number of Sequences: 5004
Number of extensions: 56555
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)