Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    56   7e-09
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    56   7e-09
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   4.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   8.1  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   8.1  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 36/100 (36%), Positives = 48/100 (48%)
 Frame = +2

Query: 80  MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPRVWSMXEQTPWYPAS*TC 259
           M QR+T+RRRL+YNT+SN  RI++TPG  + Y ++ K   IPR           PA    
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 260 *TFPSLLP*XNXETCLWWCXLP*MRQXRIVXAFLIXEQKL 379
                       +     C      + RIV AFLI EQK+
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKI 100



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 210 CGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
           CG     L+GI   RP E +RL + K TV+R YGG L    V
Sbjct: 44  CGDTGVPLQGIPALRPREFARLSHNKKTVQRAYGGCLSANAV 85


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 36/100 (36%), Positives = 48/100 (48%)
 Frame = +2

Query: 80  MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPRVWSMXEQTPWYPAS*TC 259
           M QR+T+RRRL+YNT+SN  RI++TPG  + Y ++ K   IPR           PA    
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 260 *TFPSLLP*XNXETCLWWCXLP*MRQXRIVXAFLIXEQKL 379
                       +     C      + RIV AFLI EQK+
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKI 100



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 210 CGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
           CG     L+GI   RP E +RL + +  V+R YGG L    V
Sbjct: 44  CGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSANAV 85


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 4.3
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +2

Query: 716 TPXXPXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXP 844
           T   P      PP   P   P       + P    PPPPP  P
Sbjct: 157 TVSAPNSMVSPPPSFQP---PSAAAPATSLPSDYNPPPPPPPP 196



 Score = 21.0 bits (42), Expect(2) = 4.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 824 PPPPXXPXSFLPPXS 868
           P PP  P   LPP S
Sbjct: 236 PAPPPPPPPTLPPQS 250


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXP 844
           P +  P   P P  V    P    PPPPP  P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/53 (28%), Positives = 17/53 (32%)
 Frame = +2

Query: 719 PXXPXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
           P  P       P   P   P P  +    P    PPPPP    +  PP    P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPPPPPPPP 782


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 101 RRRLSYNTKSNX-RRIVRTPGGRLVY 175
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 128 SNXRRIVRTPGGRLVYQYVXKPKKIPRVWS 217
           SN     R+PGG+ +Y Y+ K     R+ S
Sbjct: 290 SNISTFFRSPGGKKLYHYLWKNSNALRISS 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,556
Number of Sequences: 5004
Number of extensions: 36474
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)