Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_O03
(878 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34 pro... 62 3e-09
CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein. 62 3e-09
CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein. 62 3e-09
BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34 p... 62 3e-09
BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34 p... 62 3e-09
BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34 p... 62 3e-09
AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34 p... 62 3e-09
AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34 p... 56 2e-07
BC095481-1|AAH95481.1| 591|Homo sapiens enabled homolog (Drosop... 33 1.4
BC065238-1|AAH65238.1| 527|Homo sapiens ENAH protein protein. 33 1.4
AY345143-1|AAR04685.1| 570|Homo sapiens MENA protein. 33 1.4
AL591380-2|CAH71476.1| 570|Homo sapiens enabled homolog (Drosop... 33 1.4
AL591380-1|CAH71475.1| 817|Homo sapiens enabled homolog (Drosop... 33 1.4
AL356216-3|CAI22019.1| 570|Homo sapiens enabled homolog (Drosop... 33 1.4
AL356216-2|CAI22020.1| 817|Homo sapiens enabled homolog (Drosop... 33 1.4
AK096246-1|BAC04736.1| 467|Homo sapiens protein ( Homo sapiens ... 33 1.4
AF519769-1|AAQ08487.1| 591|Homo sapiens mena protein protein. 33 1.4
AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain... 32 3.2
U80017-3|AAC52048.1| 294|Homo sapiens survival motor neuron pro... 31 4.2
U43883-1|AAC50473.1| 294|Homo sapiens survival motor neuron pro... 31 4.2
U21914-1|AAA64505.1| 293|Homo sapiens U18423; it is not known i... 31 4.2
U18423-1|AAA66242.1| 294|Homo sapiens spinal muscular atrophy d... 31 4.2
BC070242-1|AAH70242.1| 282|Homo sapiens survival of motor neuro... 31 4.2
BC062723-1|AAH62723.1| 294|Homo sapiens survival of motor neuro... 31 4.2
BC015308-1|AAH15308.1| 294|Homo sapiens survival of motor neuro... 31 4.2
BC000908-1|AAH00908.1| 282|Homo sapiens SMN1 protein protein. 31 4.2
AL834396-1|CAD39058.1| 1009|Homo sapiens hypothetical protein pr... 31 4.2
AJ509090-1|CAD48858.1| 625|Homo sapiens Wiskott-Aldrich syndrom... 31 4.2
AF134304-1|AAD33053.2| 496|Homo sapiens Scar2 protein. 31 4.2
AC005031-2|AAC62262.1| 294|Homo sapiens survival of motor neuro... 31 4.2
AC004999-1|AAC83178.1| 294|Homo sapiens survival motor neuron 1... 31 4.2
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 31 5.5
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.5
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.5
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.5
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.5
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.5
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.5
AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant pr... 31 5.5
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 31 7.3
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 31 7.3
AB067489-1|BAB67795.1| 1112|Homo sapiens KIAA1902 protein protein. 31 7.3
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 31 7.3
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 30 9.6
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 30 9.6
D88460-1|BAA20128.1| 505|Homo sapiens N-WASP protein. 30 9.6
BC052955-1|AAH52955.1| 505|Homo sapiens Wiskott-Aldrich syndrom... 30 9.6
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 30 9.6
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 30 9.6
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 30 9.6
AC006333-1|AAQ96857.1| 505|Homo sapiens unknown protein. 30 9.6
>L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 61.7 bits (143), Expect = 3e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
MVQRLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 43
Score = 52.8 bits (121), Expect = 2e-06
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +3
Query: 180 MSKSPRRSQGCGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
+ K+P+ + CG C KLRG++P RP RL K V R YGG +C KCV
Sbjct: 38 VGKAPKSA--CGVCPGKLRGVRPVRPKVLMRLSKTKKHVSRAYGGSMCAKCV 87
>CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 61.7 bits (143), Expect = 3e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
MVQRLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 43
Score = 48.4 bits (110), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 180 MSKSPRRSQGCGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
+ K+P+ + CG C +LRG++ RP RL K V R YGG +C KCV
Sbjct: 38 VGKAPKSA--CGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCV 87
>CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 61.7 bits (143), Expect = 3e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
MVQRLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 43
Score = 48.4 bits (110), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 180 MSKSPRRSQGCGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
+ K+P+ + CG C +LRG++ RP RL K V R YGG +C KCV
Sbjct: 38 VGKAPKSA--CGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCV 87
>BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 61.7 bits (143), Expect = 3e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
MVQRLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 43
Score = 48.4 bits (110), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 180 MSKSPRRSQGCGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
+ K+P+ + CG C +LRG++ RP RL K V R YGG +C KCV
Sbjct: 38 VGKAPKSA--CGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCV 87
>BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 61.7 bits (143), Expect = 3e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
MVQRLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 43
Score = 48.4 bits (110), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 180 MSKSPRRSQGCGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
+ K+P+ + CG C +LRG++ RP RL K V R YGG +C KCV
Sbjct: 38 VGKAPKSA--CGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCV 87
>BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 61.7 bits (143), Expect = 3e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
MVQRLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 43
Score = 48.4 bits (110), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 180 MSKSPRRSQGCGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
+ K+P+ + CG C +LRG++ RP RL K V R YGG +C KCV
Sbjct: 38 VGKAPKSA--CGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCV 87
>AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 61.7 bits (143), Expect = 3e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
MVQRLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 43
Score = 48.4 bits (110), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 180 MSKSPRRSQGCGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCV 335
+ K+P+ + CG C +LRG++ RP RL K V R YGG +C KCV
Sbjct: 38 VGKAPKSA--CGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCV 87
>AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34
protein.
Length = 45
Score = 56.0 bits (129), Expect = 2e-07
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = +2
Query: 89 RLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
RLT+RRRLSYNT SN R+ RTPG R+VY Y K K P+
Sbjct: 1 RLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPK 40
>BC095481-1|AAH95481.1| 591|Homo sapiens enabled homolog
(Drosophila) protein.
Length = 591
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 313 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 354
>BC065238-1|AAH65238.1| 527|Homo sapiens ENAH protein protein.
Length = 527
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 270 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 311
>AY345143-1|AAR04685.1| 570|Homo sapiens MENA protein.
Length = 570
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 313 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 354
>AL591380-2|CAH71476.1| 570|Homo sapiens enabled homolog
(Drosophila) protein.
Length = 570
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 313 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 354
>AL591380-1|CAH71475.1| 817|Homo sapiens enabled homolog
(Drosophila) protein.
Length = 817
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 560 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 601
>AL356216-3|CAI22019.1| 570|Homo sapiens enabled homolog
(Drosophila) protein.
Length = 570
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 313 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 354
>AL356216-2|CAI22020.1| 817|Homo sapiens enabled homolog
(Drosophila) protein.
Length = 817
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 560 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 601
>AK096246-1|BAC04736.1| 467|Homo sapiens protein ( Homo sapiens
cDNA FLJ38927 fis, clone NT2NE2012505, highly similar to
Gallus gallus mRNA for avena. ).
Length = 467
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 210 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 251
>AF519769-1|AAQ08487.1| 591|Homo sapiens mena protein protein.
Length = 591
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 752 PLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P P P P A P PPPPP P + PP P
Sbjct: 313 PPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPP 354
>AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain 4
protein protein.
Length = 3567
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXS 868
P P P P + P+ P P P PPPPP P PP S
Sbjct: 1958 PPPPPPPPPLPPAPPQPSSMGPVKIPNTVSTPLQAPPPTPPPPPPPPPPPPPPPPPPPPS 2017
Query: 869 XSP 877
P
Sbjct: 2018 APP 2020
>U80017-3|AAC52048.1| 294|Homo sapiens survival motor neuron
protein SMN protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>U43883-1|AAC50473.1| 294|Homo sapiens survival motor neuron
protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>U21914-1|AAA64505.1| 293|Homo sapiens U18423; it is not known if
this copy of the gene protein.
Length = 293
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 185 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 244
Query: 643 PPP 651
PPP
Sbjct: 245 PPP 247
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 197 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 239
>U18423-1|AAA66242.1| 294|Homo sapiens spinal muscular atrophy
determining gene protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>BC070242-1|AAH70242.1| 282|Homo sapiens survival of motor neuron
2, centromeric protein.
Length = 282
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>BC062723-1|AAH62723.1| 294|Homo sapiens survival of motor neuron
1, telomeric protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>BC015308-1|AAH15308.1| 294|Homo sapiens survival of motor neuron
1, telomeric protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>BC000908-1|AAH00908.1| 282|Homo sapiens SMN1 protein protein.
Length = 282
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>AL834396-1|CAD39058.1| 1009|Homo sapiens hypothetical protein
protein.
Length = 1009
Score = 31.5 bits (68), Expect = 4.2
Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Frame = +1
Query: 463 KNLKNSPXXPXXXXPPPXXX-PPXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLW 639
+ ++N P P PPP PP P P LPG AP P+
Sbjct: 457 ETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLPGPAAETVPAPPLAPPLPSA----- 511
Query: 640 PPPPSXXXPXKFF 678
PP P P F
Sbjct: 512 PPLPGTSSPTVVF 524
>AJ509090-1|CAD48858.1| 625|Homo sapiens Wiskott-Aldrich syndrome
protein family member 4 protein.
Length = 625
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 728 PXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P PP P F P P P PPPPP P F P + P
Sbjct: 430 PAPPLGSPPSSKPGFAPPPAPPPPPPPMIGIPPPPP--PIGFGSPGTPPP 477
>AF134304-1|AAD33053.2| 496|Homo sapiens Scar2 protein.
Length = 496
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 728 PXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P PP P F P P P PPPPP P F P + P
Sbjct: 301 PAPPLGSPPSSKPGFAPPPAPPPPPPPMIGIPPPPP--PIGFGSPGTPPP 348
>AC005031-2|AAC62262.1| 294|Homo sapiens survival of motor neuron 1
product protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>AC004999-1|AAC83178.1| 294|Homo sapiens survival motor neuron 1
protein protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +1
Query: 472 KNSPXXPXXXXPPPXXXP---PXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWP 642
K++P PPP P P P P P W P FP+ + P
Sbjct: 186 KSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPP 245
Query: 643 PPP 651
PPP
Sbjct: 246 PPP 248
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP+ P P + P PPPPP +LPP P
Sbjct: 198 PPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP 240
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP P P PG + P PPP P PP + +P
Sbjct: 239 PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP P P PG + P PPP P PP + +P
Sbjct: 239 PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP P P PG + P PPP P PP + +P
Sbjct: 239 PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP P P PG + P PPP P PP + +P
Sbjct: 239 PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP P P PG + P PPP P PP + +P
Sbjct: 239 PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP P P PG + P PPP P PP + +P
Sbjct: 239 PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 749 PPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
PP P P PG + P PPP P PP + +P
Sbjct: 239 PPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant
protein.
Length = 410
Score = 31.1 bits (67), Expect = 5.5
Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXXPXF-FPXPGXVXXAFPXXXXPPPPPXXPXSFLPP 862
P P F P T PP P P A P PP PP P +PP
Sbjct: 341 PTYNPNFPPPPPRLPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPPPGMPP 399
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 30.7 bits (66), Expect = 7.3
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 728 PXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P PP P F P P P PPPPP P F P + P
Sbjct: 302 PAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPP--PVGFGSPGTPPP 349
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 30.7 bits (66), Expect = 7.3
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 728 PXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P PP P F P P P PPPPP P F P + P
Sbjct: 302 PAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPP--PVGFGSPGTPPP 349
>AB067489-1|BAB67795.1| 1112|Homo sapiens KIAA1902 protein protein.
Length = 1112
Score = 30.7 bits (66), Expect = 7.3
Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Frame = +1
Query: 463 KNLKNSPXXPXXXXPPPXXX-PPXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLW 639
+ ++N P P PPP PP P P LPG AP P+
Sbjct: 560 ETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLPGPASETVPAPPLAPPLPSA----- 614
Query: 640 PPPPSXXXPXKFF 678
PP P P F
Sbjct: 615 PPLPGTSSPTVVF 627
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 30.7 bits (66), Expect = 7.3
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 728 PXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
P PP P F P P P PPPPP P F P + P
Sbjct: 302 PAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPP--PVGFGSPGTPPP 349
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +1
Query: 505 PPPXXXPPXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWPPPPSXXXP 666
PPP PP P P L LP P P +PPP + P
Sbjct: 318 PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMP 371
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +1
Query: 505 PPPXXXPPXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWPPPPSXXXP 666
PPP PP P P L LP P P +PPP + P
Sbjct: 318 PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMP 371
>D88460-1|BAA20128.1| 505|Homo sapiens N-WASP protein.
Length = 505
Score = 30.3 bits (65), Expect = 9.6
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXXPXFFPX-----PGXVXXAFPXXXXPPPPPXXPXSF 853
P P P P + PP P P P V P PPPPP P
Sbjct: 326 PPSRPSVEVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGP 385
Query: 854 LPP 862
PP
Sbjct: 386 PPP 388
>BC052955-1|AAH52955.1| 505|Homo sapiens Wiskott-Aldrich
syndrome-like protein.
Length = 505
Score = 30.3 bits (65), Expect = 9.6
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXXPXFFPX-----PGXVXXAFPXXXXPPPPPXXPXSF 853
P P P P + PP P P P V P PPPPP P
Sbjct: 326 PPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGP 385
Query: 854 LPP 862
PP
Sbjct: 386 PPP 388
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +1
Query: 505 PPPXXXPPXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWPPPPSXXXP 666
PPP PP P P L LP P P +PPP + P
Sbjct: 245 PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMP 298
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +1
Query: 505 PPPXXXPPXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWPPPPSXXXP 666
PPP PP P P L LP P P +PPP + P
Sbjct: 355 PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMP 408
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 30.3 bits (65), Expect = 9.6
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +1
Query: 505 PPPXXXPPXXPXXXXPXXXLPGXXVLPXXXVXWAPXFPTXXXXLWPPPPSXXXP 666
PPP PP P P L LP P P +PPP + P
Sbjct: 318 PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMP 371
>AC006333-1|AAQ96857.1| 505|Homo sapiens unknown protein.
Length = 505
Score = 30.3 bits (65), Expect = 9.6
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXXPXFFPX-----PGXVXXAFPXXXXPPPPPXXPXSF 853
P P P P + PP P P P V P PPPPP P
Sbjct: 326 PPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGP 385
Query: 854 LPP 862
PP
Sbjct: 386 PPP 388
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,352,013
Number of Sequences: 237096
Number of extensions: 1989131
Number of successful extensions: 10823
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 4709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8875
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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