Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_O03
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 62 5e-10
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.47
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.47
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.47
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.47
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.62
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.5
U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 4.4
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 5.8
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 5.8
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 29 5.8
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2
Query: 80 MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVXKPKKIPR 208
M R+T+RRRLSYNT SN +R+V+TPGGRLV QY+ K +IP+
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPK 43
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +3
Query: 210 CGPCXSKLRGIQPARPAERSRLCYRKXTVKRVYGGVLCHKCVSXALS 350
C KL GI PARP L + TV R YGG L V ++
Sbjct: 44 CRDTGVKLHGITPARPIALRLLKRNERTVTRAYGGCLSPNAVKERIT 90
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXX-PXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPX 865
P P P P PP+ P P PG + P PPPPP P PP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCPPPP 772
Query: 866 SXSP 877
P
Sbjct: 773 PPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXX-PXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPX 865
P P P P PP+ P P PG + P PPPPP P PP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCPPPP 772
Query: 866 SXSP 877
P
Sbjct: 773 PPPP 776
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.47
Identities = 26/92 (28%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Frame = -1
Query: 752 GGXXGFWXVXGGXXXXXGXXXXXKKKNFXGXQXEGGGGQRXQXXVG-KXGAQXTXXKGRT 576
GG G W GG G N G GGGG G G G
Sbjct: 82 GGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGR 141
Query: 575 XXPGRXXXGXXXXGXXGGXXXGGGXXXXGXXG 480
GR G G GG GG G G
Sbjct: 142 GGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGG 173
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXX-PXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPX 865
P P P P PP+ P P PG + P PPPPP P PP
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCPPPP 355
Query: 866 SXSP 877
P
Sbjct: 356 PPPP 359
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = +2
Query: 689 PXXXPXFXXTPXXPXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXS 868
P P P P PP+ P F P P P PPPPP P P S
Sbjct: 31 PPPPPPMCAPPPLPCPP---PPICPPQFCPPPPMC----PPPPPPPPPPMCPPPPPPMPS 83
Query: 869 XSP 877
SP
Sbjct: 84 YSP 86
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = +2
Query: 677 FFXXPXXXPXFXXTPXXPXKTXXXPPLXXPXFFPXP---GXVXXAFPXXXXPPPPPXXPX 847
FF P F P P PP+ P P G + P PPPPP
Sbjct: 63 FFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSG 122
Query: 848 SFLPPXSXSP 877
+ P P
Sbjct: 123 LGVAPQPPRP 132
>U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical
protein B0261.5 protein.
Length = 196
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 31 FLXFCFPWSPAVXKLENGAAAYIQATTVVQHKIKSKKNSKD 153
F+ C P+ K + + + +TT+ Q K SK+ SKD
Sbjct: 21 FVIGCLKKKPSQSKKKPSKVSTVTSTTISQEKTNSKRGSKD 61
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +2
Query: 728 PXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPP-XXPXSFLPPXSXSP 877
P T PP P P P A P PPPPP P +P + P
Sbjct: 19 PAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPP 69
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 716 TPXXPXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
TP K PP P P P + PP PP S +PP P
Sbjct: 458 TPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPP 511
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 716 TPXXPXKTXXXPPLXXPXFFPXPGXVXXAFPXXXXPPPPPXXPXSFLPPXSXSP 877
TP K PP P P P + PP PP S +PP P
Sbjct: 465 TPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPP 518
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 466 NLKNSPXXPXXXXPPPXXXPPXXPXXXXPXXXLPGXXVLP 585
+++ +P P PPP PP P +P VLP
Sbjct: 112 SVETNPGTPRIYLPPPPRPPPVPPLSPPERPDIPHARVLP 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,378,282
Number of Sequences: 27780
Number of extensions: 257956
Number of successful extensions: 1143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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