Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_O01
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339           31   0.89 
07_03_0946 - 22798055-22798742,22799746-22799810                       30   2.0  
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796...    30   2.7  
06_01_0035 + 358669-359007,359458-359617,359723-360582                 29   4.7  
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     29   6.2  

>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
          Length = 503

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 425 IDIDRRFRLCTRSAWLGPQSARSHYSRPRWW*TSSCPNYI 306
           ID+D     C R    GP+  RS+ S PR W   +CP  I
Sbjct: 464 IDLDLDHSNCLRHRSGGPELNRSNKSPPRIWLRQACPRKI 503


>07_03_0946 - 22798055-22798742,22799746-22799810
          Length = 250

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 413 RRFRLCTRSAWLGPQSARSHYSRPRWW*-TSSCPNYILPLRS 291
           RR  +  R++ L   S     S+PRWW  T +C  Y+LPL +
Sbjct: 71  RRLEVGCRASSLASFSYPELTSKPRWWWRTVACVPYLLPLHN 112


>03_06_0568 -
           34778408-34778710,34779340-34779411,34779549-34779635,
           34779722-34779880,34780641-34780739,34780823-34780903,
           34781007-34781461,34781550-34781679,34781952-34782743
          Length = 725

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 527 VRGTLRNTTRLCRIWSIC*Y*MLLLIPLFWYPCRI-DIDRRFRLCTRS 387
           VR  ++ T  +CR W      ++LL+   W+ C I   D   RL T S
Sbjct: 192 VRSKIKYTYPICRAWMFSAGKLILLLLAVWFNCNIRGFDSLLRLGTNS 239


>06_01_0035 + 358669-359007,359458-359617,359723-360582
          Length = 452

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -3

Query: 684 KAAVCSAXFLSVKTRGIREENIXVIVYDKVVYS 586
           +A VC A +  +K  G++++NI V++YD + Y+
Sbjct: 58  QADVCHA-YQIMKKGGLKDQNIVVMMYDDIAYN 89


>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 297 QRQDIIWTRRSLPPSRA*IMAS---RRLWTQPRRPCT*AEATVYIDTT 431
           +R   + +RR L P RA  + S   R  W+  RRP T + ATV  D T
Sbjct: 35  ERYSRVPSRRLLQPQRAFNLISIYKRSSWSSARRPRTLSAATVGTDVT 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,600,280
Number of Sequences: 37544
Number of extensions: 414972
Number of successful extensions: 1004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)