Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_O01
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical... 30 1.8
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 29 3.2
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 29 3.2
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 29 3.2
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 29 3.2
Z68751-7|CAA92977.2| 319|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z72511-6|CAA96659.2| 391|Caenorhabditis elegans Hypothetical pr... 28 9.7
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 28 9.7
>AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical
protein F41E6.14 protein.
Length = 656
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Frame = +2
Query: 209 LDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFT--TIEGVNNGFAQTVDPT 382
+D PY +T+DY + S + + + ++ + T +N +
Sbjct: 540 IDLPYYVTIDYPAKLMARSLIYRKNLEEKLAVNFKTVNRQLSDQTDRLLNANCSNCQFND 599
Query: 383 TQTVYIGGSDGLYRYDKDTKRAELIGASSINIWTIFYKDVLY 508
Q GSD Y ++KDT +A S + + Y + +Y
Sbjct: 600 IQKALTNGSDKFYLFEKDTYKALTYDGSHLTLTGFKYIEPIY 641
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
+L L+ P L +DY +D+YF D + R N+DTK+ + ++NG
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606
Query: 374 D 376
D
Sbjct: 607 D 607
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
+L L+ P L +DY +D+YF D + R N+DTK+ + ++NG
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606
Query: 374 D 376
D
Sbjct: 607 D 607
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
+L L+ P L +DY +D+YF D + R N+DTK+ + ++NG
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606
Query: 374 D 376
D
Sbjct: 607 D 607
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 194 MLYENLDRPYLLTVDYSTNDLYFSYSIDNDEDSSATARYNLDTKKFTTIEGVNNGFAQTV 373
+L L+ P L +DY +D+YF D + R N+DTK+ + ++NG
Sbjct: 554 LLDNKLEVPSALAIDYIRHDVYF-----GDVERQLIERVNIDTKERRVV--ISNGVHHPY 606
Query: 374 D 376
D
Sbjct: 607 D 607
>Z68751-7|CAA92977.2| 319|Caenorhabditis elegans Hypothetical
protein T05E11.6 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 197 LYENLDRPYLLTVDYS-TNDLYFSYSIDNDEDSSATARYNLDTKKFTTIE 343
+YE +D P +L++ S T++ +SY +D D RY T F T E
Sbjct: 203 MYEWIDSPNVLSLSSSLTHEESYSYDVDTDIGVYVIDRYTHYTVNFLTKE 252
>Z72511-6|CAA96659.2| 391|Caenorhabditis elegans Hypothetical
protein F55A11.5 protein.
Length = 391
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +2
Query: 320 TKKFTTIEGVNNGFAQTVDPTTQTVYIGGSDGLYRYDKDTKRAELIGASSINIWTIFYKD 499
T ++T E + + F P + + DG++R K+ +R + +S+ WT+
Sbjct: 276 TDRWTIKEQLLHDFYSEEQPINRQFPVERGDGVWRSWKEPRRHFYVKLTSLMFWTL---- 331
Query: 500 VLYFSTYPSHILYTFSNGQITRFQI 574
V+ F +Y + T G + F I
Sbjct: 332 VISFCSYHIFFVRTLQLGFLYFFVI 356
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 199 EHLLFVRHPVDFDAFALPSEGSRLSHDYACH*QEQLHFDHVFLR 68
+HL RH DFD LP + + A H + +H+F+R
Sbjct: 208 KHLRRHRHEDDFDELPLPKNERKTTTVAATHSEIMNEMEHLFVR 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,550
Number of Sequences: 27780
Number of extensions: 347943
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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