Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N20
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   6.0  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 335 FTSYATIYLMYVKFKATY 388
           F SY T++ +YV+  AT+
Sbjct: 127 FISYGTLFFIYVQPSATF 144


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 580 LSVCXRVHIELCTS*TGFTVMLW 648
           LSVC R+++ L  S T   V +W
Sbjct: 33  LSVCERLNLALSLSLTETQVKIW 55


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = -2

Query: 403 VMVVIIGGLKLDIHQINSCIGGKDEHQLHDSVIAGTHEL 287
           +M  ++G + + +  I+ C G  D  +L+D +++  ++L
Sbjct: 1   MMKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYNKL 39


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 335 FTSYATIYLMYVKFKATY 388
           F SY T++ +YV   AT+
Sbjct: 128 FISYGTLFFIYVHPSATF 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,671
Number of Sequences: 438
Number of extensions: 5009
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)