Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N18
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.39 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.7  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    27   3.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 617 PPPPPFXXXKKPPXXPPPXF 676
           PPPP F    +PP  PPP +
Sbjct: 13  PPPPGFEPPSQPPPPPPPGY 32



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 617 PPPPPFXXXKKPPXXPPP 670
           PPPPP     +PP  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 578 LPKXXXFXXGXXXPPPPPFXXXKKPPXXPPP 670
           +P       G   PPPPP      PP  PPP
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 669 GGGXXGGFFXXXKGGGGGXFXPXXKXXFFGR 577
           GGG  GGF    +GG  G F    +  F GR
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRGGFRGR 193


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 620 PPPPFXXXKKPPXXPPPXF 676
           PPPP      PP  PPP +
Sbjct: 48  PPPPSVDHSAPPSGPPPSY 66


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 159 FXPRIRANEGEHYYVLIQFNAVHKPRNTPHRACRTV 52
           F PR+ A  G+ Y+VL Q NA +   +  H  CR+V
Sbjct: 171 FEPRLFARLGDLYFVLAQSNATNYWFSLKH-YCRSV 205


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 669 GGGXXGGFFXXXKGGGGGXFXPXXKXXFFGRXP 571
           GGG  GGF     GGG G         F G  P
Sbjct: 165 GGGMPGGFANMFGGGGAGPHARRSHPSFGGSRP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,421
Number of Sequences: 5004
Number of extensions: 27536
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)