Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N16
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    31   0.28 
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    30   0.50 
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    29   0.87 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   2.0  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   2.7  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    27   2.7  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   3.5  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   8.1  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 83  IMASKFKSEKIGIVGSGLIGRSWA--MLFASVGYQVTVYDVVAKQITDAIEDIKY 241
           + +S FKS KI IVG+G +G + A  +L + +  ++ + D+  K+      D+ +
Sbjct: 13  VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNH 67


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/89 (19%), Positives = 40/89 (44%)
 Frame = +2

Query: 95  KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLL 274
           + + + +GI+G G IG   ++L  ++G  V  YD++      + + +      L     +
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDILPIMPLGSAKQLSSLPELLHRADFV 251

Query: 275 RGELKASEQFQCIKGSTDLATAVKGAVFV 361
              + AS + + +  S + A   +G+  +
Sbjct: 252 SLHVPASPETKNMISSKEFAAMKEGSYLI 280


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 27/97 (27%), Positives = 44/97 (45%)
 Frame = +3

Query: 291 LANNFNV*KGLRIWQPQLKEQYLFRNVFQRILTLKKRCSRISTA*LTXTRYYQVQQVLLC 470
           L + FN   G  + Q    +  LF+ + +++LTL+ +C  +    L    Y Q Q++   
Sbjct: 197 LTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKCCYLKQI-LQAVAYLQSQRIA-- 253

Query: 471 HHYSLKD*NISLRSLFLIR*IHLITYPLVEIVPAPWD 581
            H  LK  NI +    L++   L  +   EIV  P D
Sbjct: 254 -HRDLKPENILIGRDGLLK---LTDFGTSEIVGNPGD 286


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 168 EANNIAHDLPIKPLPTIPIFSDLNLDAMITVDATVPHDKPLVNQILRIPYSE 13
           EA N +   PI  + ++ +   +    MIT+  T+ HD    + IL  PY E
Sbjct: 272 EAKNASKAAPIAIISSLTVSLFMGFCIMITIAGTMGHD---FSSILNTPYGE 320


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 110 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 196
           ++GI+G G +GR +A   +  G++V V D
Sbjct: 6   QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 107 EKIGIVGSGLIGRSWAMLFASVGYQVTVYD 196
           +++GI+G G IG+S+A     +G ++  ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEIVYHN 189


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 68  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 196
           V+ST  ++     +K+ ++G G+IG     +++ +G +VTV +
Sbjct: 205 VSSTGALSLSEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVVE 247


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 311 IKGSTDLATAVKGAVFVQECVPENLDLK 394
           + G+  LAT  +GA+ VQ   P NL++K
Sbjct: 165 VSGTRVLATMAQGAIAVQRAAP-NLEIK 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,171
Number of Sequences: 5004
Number of extensions: 62681
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)