Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N16
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249...    44   2e-04
06_01_0080 + 644021-645463                                             30   2.1  
01_06_0663 - 30991390-30992340                                         29   6.5  
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571           28   8.5  

>01_06_1005 +
           33723743-33723946,33724035-33724256,33724789-33724901,
           33725581-33725950
          Length = 302

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = +2

Query: 113 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDG-LLRGELK 289
           +G++G+G +G   A L A+ G  V + D     ++ A++ I   L  L   G L +   +
Sbjct: 13  VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72

Query: 290 AS-EQFQCIKGSTDLATAVKGAVFVQECVPENLDLKKKVF 406
            S EQ +C+    +L    + A  V E + E+ D+KKK+F
Sbjct: 73  HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLF 108


>06_01_0080 + 644021-645463
          Length = 480

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/45 (22%), Positives = 27/45 (60%)
 Frame = +2

Query: 110 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 244
           +IG+ G  ++G++ A+  A  G+ ++VY+    ++ + ++  K +
Sbjct: 5   RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVE 49


>01_06_0663 - 30991390-30992340
          Length = 316

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 110 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQ 211
           ++  VG+G++G+S A    + GY +TVY+  A +
Sbjct: 21  RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASK 54


>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
          Length = 527

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 68  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 247
           V+ST  +A     +K+ ++G+G IG     ++  +G +VTV +  +  +     +I+ Q 
Sbjct: 222 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFASDIVPSMDGEIRKQF 281

Query: 248 HTL 256
             +
Sbjct: 282 QRM 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,420,782
Number of Sequences: 37544
Number of extensions: 409554
Number of successful extensions: 917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)