Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N16
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    24   1.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   8.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   8.5  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 739 LLMSRILXKVPSHRLGMKYXFLGA 810
           +L ++ +  V S  LGM+Y FLGA
Sbjct: 29  ILNAKDVDAVMSEGLGMRYAFLGA 52


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 70  DRTARQTSRESNLKDSL 20
           DRT R+TS+E  +  SL
Sbjct: 69  DRTERETSKEPKIISSL 85


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 70  DRTARQTSRESNLKDSL 20
           DRT R+TS+E  +  SL
Sbjct: 69  DRTERETSKEPKIISSL 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,829
Number of Sequences: 438
Number of extensions: 4527
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)