Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_N15
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 100 1e-21
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 100 1e-21
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 81 1e-15
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 81 1e-15
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 55 8e-08
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 38 0.007
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 38 0.013
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 36 0.029
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 36 0.029
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 36 0.029
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 34 0.12
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 34 0.12
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 33 0.21
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 33 0.21
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 33 0.21
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 33 0.21
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 30 1.9
AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical ... 29 3.4
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 29 4.4
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 28 7.8
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 28 7.8
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 100 bits (240), Expect = 1e-21
Identities = 72/189 (38%), Positives = 96/189 (50%)
Frame = +3
Query: 213 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYF 392
DQVVE+FDDM LKEELLRGIY +GFEKPSAIQ+RAI+P +++ +AQSGTGK F
Sbjct: 25 DQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIA-QAQSGTGKTATF 83
Query: 393 SLYRFYNKSIQAFVNVKL*SWAPTESWAHQFRKVVIAXG*SLEMLNAMPGIGGHQCP*RY 572
S+ + +V+ APT A Q +KV+ A G L +N +P IGG
Sbjct: 84 SV-SILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLN-VNILPCIGGTSVRDDQ 141
Query: 573 SPLXXXXXXXXXXXXXCI*YDNXSCRFMPPPIXLFWXXXXXXXXXXXXFKDQIHDVFKML 752
L D + + + FKDQI++VF+ +
Sbjct: 142 RKLEAGIHVVVGTPGRV--GDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSM 199
Query: 753 SADVQVILL 779
DVQV+LL
Sbjct: 200 PQDVQVVLL 208
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 100 bits (240), Expect = 1e-21
Identities = 72/189 (38%), Positives = 96/189 (50%)
Frame = +3
Query: 213 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYF 392
DQVVE+FDDM LKEELLRGIY +GFEKPSAIQ+RAI+P +++ +AQSGTGK F
Sbjct: 25 DQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIA-QAQSGTGKTATF 83
Query: 393 SLYRFYNKSIQAFVNVKL*SWAPTESWAHQFRKVVIAXG*SLEMLNAMPGIGGHQCP*RY 572
S+ + +V+ APT A Q +KV+ A G L +N +P IGG
Sbjct: 84 SV-SILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLN-VNILPCIGGTSVRDDQ 141
Query: 573 SPLXXXXXXXXXXXXXCI*YDNXSCRFMPPPIXLFWXXXXXXXXXXXXFKDQIHDVFKML 752
L D + + + FKDQI++VF+ +
Sbjct: 142 RKLEAGIHVVVGTPGRV--GDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSM 199
Query: 753 SADVQVILL 779
DVQV+LL
Sbjct: 200 PQDVQVVLL 208
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 81.0 bits (191), Expect = 1e-15
Identities = 48/97 (49%), Positives = 60/97 (61%)
Frame = +3
Query: 219 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYFSL 398
V+ TFD M L+E+LLRGIYAYGFEKPSAIQQRA+ P + + +AQSGTGK FS+
Sbjct: 24 VIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAV-PAILKARDVIAQAQSGTGKTATFSI 82
Query: 399 YRFYNKSIQAFVNVKL*SWAPTESWAHQFRKVVIAXG 509
+ Q L +PT A Q +KVV+A G
Sbjct: 83 SVLQSLDTQVRETQAL-ILSPTRELAVQIQKVVLALG 118
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 81.0 bits (191), Expect = 1e-15
Identities = 48/97 (49%), Positives = 60/97 (61%)
Frame = +3
Query: 219 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYFSL 398
++ TFD M L+E+LLRGIYAYGFEKPSAIQQRAI P + + +AQSGTGK FS+
Sbjct: 24 IIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAI-PAILKARDVIAQAQSGTGKTATFSI 82
Query: 399 YRFYNKSIQAFVNVKL*SWAPTESWAHQFRKVVIAXG 509
+ Q L +PT A Q +KVV+A G
Sbjct: 83 SVLQSLDTQVRETQAL-ILSPTRELAVQIQKVVLALG 118
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 54.8 bits (126), Expect = 8e-08
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +3
Query: 240 MNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGK 380
M LKEELLRGIY +GFEKPSAIQ+ A+ P +++++Q+G+GK
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPC-TTGKDVTIQSQAGSGK 46
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3
Query: 717 FKDQIHDVFKMLSADVQVILL 779
FKDQI++VF+ + DVQV+LL
Sbjct: 147 FKDQIYEVFRSMPQDVQVVLL 167
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 38.3 bits (85), Expect = 0.007
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +3
Query: 222 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPWHPRDAMLSLKAQSGTGKNCYFS 395
+ +F ++ LK E+L+ + F+ P+ IQ+ A+ + P +++ +AQSGTGK F
Sbjct: 208 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA-QAQSGTGKTAAFV 266
Query: 396 LYRFYNKSIQAFVNVKL*SWAPTESWAHQFRKVVIAXG*SLEMLNAMPGIGG 551
L + + APT A Q +VV G ++ L I G
Sbjct: 267 LTMLCRIDVNLMCPQCI-CLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKG 317
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 38.3 bits (85), Expect = 0.007
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +3
Query: 222 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPWHPRDAMLSLKAQSGTGKNCYFS 395
+ +F ++ LK E+L+ + F+ P+ IQ+ A+ + P +++ +AQSGTGK F
Sbjct: 233 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA-QAQSGTGKTAAFV 291
Query: 396 LYRFYNKSIQAFVNVKL*SWAPTESWAHQFRKVVIAXG*SLEMLNAMPGIGG 551
L + + APT A Q +VV G ++ L I G
Sbjct: 292 LTMLCRIDVNLMCPQCI-CLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKG 342
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 38.3 bits (85), Expect = 0.007
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +3
Query: 222 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPWHPRDAMLSLKAQSGTGKNCYFS 395
+ +F ++ LK E+L+ + F+ P+ IQ+ A+ + P +++ +AQSGTGK F
Sbjct: 617 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA-QAQSGTGKTAAFV 675
Query: 396 LYRFYNKSIQAFVNVKL*SWAPTESWAHQFRKVVIAXG*SLEMLNAMPGIGG 551
L + + APT A Q +VV G ++ L I G
Sbjct: 676 LTMLCRIDVNLMCPQCI-CLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKG 726
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +3
Query: 231 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGK 380
F+D L +LL GI+ G+EKPS IQ+ +I +L+ +A++GTGK
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILA-RAKNGTGK 93
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 204 PTGDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKN 383
P G + +TF + NL E + + + G+ K + IQQ + H +++ AQ+G+GK
Sbjct: 545 PVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMAC-AQTGSGKT 603
Query: 384 CYFSL 398
F L
Sbjct: 604 AAFLL 608
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 204 PTGDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKN 383
P G + +TF + NL E + + + G+ K + IQQ + H +++ AQ+G+GK
Sbjct: 545 PVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMAC-AQTGSGKT 603
Query: 384 CYFSL 398
F L
Sbjct: 604 AAFLL 608
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 204 PTGDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKN 383
P G + +TF + NL E + + + G+ K + IQQ + H +++ AQ+G+GK
Sbjct: 545 PVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMAC-AQTGSGKT 603
Query: 384 CYFSL 398
F L
Sbjct: 604 AAFLL 608
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 228 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYFSLYRF 407
TF+ + + ++ L + F++PS +Q RAI P + ++A+SGTGK FS+
Sbjct: 23 TFESLMIGQKTLERLKNSQFDRPSPVQARAI-PVGLLGRDMLVQAKSGTGKTLVFSVLAV 81
Query: 408 YN 413
N
Sbjct: 82 EN 83
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 228 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYFSLYRF 407
TF+ + + ++ L + F++PS +Q RAI P + ++A+SGTGK FS+
Sbjct: 23 TFESLMIGQKTLERLKNSQFDRPSPVQARAI-PVGLLGRDMLVQAKSGTGKTLVFSVLAV 81
Query: 408 YN 413
N
Sbjct: 82 EN 83
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 210 GDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCY 389
G + +TF + NL E + + + G+ K + IQQ A+ H +++ AQ+G+GK
Sbjct: 336 GIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMAC-AQTGSGKTAA 394
Query: 390 FSL 398
F L
Sbjct: 395 FLL 397
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 210 GDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCY 389
G + +TF + NL E + + + G+ K + IQQ A+ H +++ AQ+G+GK
Sbjct: 336 GIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMAC-AQTGSGKTAA 394
Query: 390 FSL 398
F L
Sbjct: 395 FLL 397
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 210 GDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCY 389
G + +TF + NL E + + + G+ K + IQQ A+ H +++ AQ+G+GK
Sbjct: 336 GIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMAC-AQTGSGKTAA 394
Query: 390 FSL 398
F L
Sbjct: 395 FLL 397
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 228 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYFSL 398
+F+ MNL ++L+ G+ P+ IQQ A +P + A +GTGK F L
Sbjct: 149 SFEQMNLSRQILKACSGAGYSDPTPIQQ-ACIPVALTGKDICACAATGTGKTAAFVL 204
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +3
Query: 225 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYF 392
+TF D L E +L+ I G+EK + +Q+ +++ + + +A++G+GK F
Sbjct: 89 KTFADFGLDERILKSIGELGWEKANQVQE-SVISLALENKNIMGRARTGSGKTGAF 143
>AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical
protein Y39A3B.5a protein.
Length = 582
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 169 IVTTLDPSMAHFWNPLANLLTFFQTNKT 86
+ + D FWN L+N LTF Q +KT
Sbjct: 343 VASMTDEQKLSFWNKLSNKLTFSQQDKT 370
>AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical
protein Y39A3B.5c protein.
Length = 471
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 169 IVTTLDPSMAHFWNPLANLLTFFQTNKT 86
+ + D FWN L+N LTF Q +KT
Sbjct: 232 VASMTDEQKLSFWNKLSNKLTFSQQDKT 259
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 29.1 bits (62), Expect = 4.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 539 WHWWAPMSVKIFXTGXW 589
WHWW P+S+ F T +
Sbjct: 406 WHWWIPVSIARFLTSLY 422
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 219 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKNCYFSL 398
++ F D ++ LL + +PS IQ ++I P+ + A +G+GK F+L
Sbjct: 124 IILRFSDSSMSPSLLNRLSENSIRQPSPIQMQSI-PFMTERRNVLASAPTGSGKTLAFAL 182
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 204 PTGDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKN 383
P Q ++F D ++ + + R + G+ + + IQQ +P + AQ+G+GK
Sbjct: 291 PVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYT-LPLVADGKDILACAQTGSGKT 349
Query: 384 CYFSL 398
F L
Sbjct: 350 AAFLL 354
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 204 PTGDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKAQSGTGKN 383
P Q ++F D ++ + + R + G+ + + IQQ +P + AQ+G+GK
Sbjct: 291 PVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYT-LPLVADGKDILACAQTGSGKT 349
Query: 384 CYFSL 398
F L
Sbjct: 350 AAFLL 354
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,701,699
Number of Sequences: 27780
Number of extensions: 444361
Number of successful extensions: 945
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -