Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N14
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    31   0.94 
07_03_0630 - 20097672-20097772,20097983-20102012                       31   1.6  
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539...    30   2.2  
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792...    29   3.8  
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553...    29   5.0  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = -1

Query: 337 CSSTPMVFRXLSMIRLLTTFWMMEP----LALGSHIPSSDGQHCRSRPVRMLLYSFSSRS 170
           C         L+++ L+   W + P    + L + + SS        P   +  SF S +
Sbjct: 26  CFDVKSFVASLALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTA 85

Query: 169 WLEVSADSSTTPALAASMHIANTTR 95
               S D++T P   A+  +A TTR
Sbjct: 86  AATNSTDTATVPTTTAAARVAATTR 110


>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
 Frame = -1

Query: 289 LTTFWMMEPLALGSHIPSSDGQH-------CRSRPVRMLLYSFSSRSWLEVSADSSTTPA 131
           L TF +++    GSH PS++  H       C S+ +R+L  +FSSRS+  +   S+ +  
Sbjct: 615 LRTFMLLD----GSHQPSNNETHLPLSNFLCNSKSLRLL--AFSSRSYKWLGRTSALSNV 668

Query: 130 LAASMHIANTTRSFILLGSL 71
           ++++ H+     SF  +  L
Sbjct: 669 ISSTKHLRYLDLSFTGIAKL 688


>02_02_0584 -
           11853149-11853573,11853673-11853787,11853868-11853981,
           11854049-11854108,11854265-11854600,11854681-11854724,
           11854776-11855507,11855736-11855921,11856012-11856153,
           11856250-11856300
          Length = 734

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 265 PLALGS-HIPSSDGQHCRSRPVRMLLYSFSSRSWLEVSADSSTTPALA 125
           PLA GS H+   +     + PV   L+SF  R +L+   + +T+ ALA
Sbjct: 535 PLAAGSYHVEEEEQPAAPAIPVLADLFSFDIRDYLDEGEEDTTSKALA 582


>01_06_1094 -
           34478538-34478624,34478860-34478931,34479154-34479222,
           34479312-34479422,34480390-34480528,34480590-34480705,
           34480821-34480968,34481058-34481215,34481654-34481827,
           34482592-34483056
          Length = 512

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 178 RRNCTTASSPGDYDSAVRQSLEYESQGQGA 267
           RR+   A++PGD D+A+R   E    G GA
Sbjct: 76  RRSAAPAAAPGDLDAAIRAEEEERLYGGGA 105


>02_01_0743 -
           5530184-5531078,5531160-5531405,5531815-5532450,
           5534499-5534607,5536157-5536321,5536446-5536543,
           5536648-5536898
          Length = 799

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +1

Query: 109 RCACSPPARASLNYPR-TLLTKTS----RRNCTTASSPGDYDSAV 228
           RC  SPP    LNYP  T++  TS    RR       PG Y + V
Sbjct: 686 RCPASPPKVQDLNYPSITVVNLTSSATVRRTVKNVGKPGVYKAYV 730


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,198
Number of Sequences: 37544
Number of extensions: 273136
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)