Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_N13
(1020 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.20
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.46
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.46
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.46
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 9.8
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.20
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 155 PXXPPXPPPXXPPXXXPXSXPXXXXPPXTXQXKRGPPP 268
P PP PPP PP P S P PP + ++ P
Sbjct: 6 PGNPPPPPP--PPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.46
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +2
Query: 119 PXXXSXPXXGPXPXXPPXPPPXXPPXXXPXSXPXXXXPPXTXQXKRGPPPRXPXXXQXH 295
P S P P P P PP P P S P P + P R Q H
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSALLQQIH 1757
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +2
Query: 131 SXPXXGPXPXXPPXPPPXXPPXXXPXSXPXXXXPPXTXQXKRGPPPRXP 277
S P P PP PP P PP PPP P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.46
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -1
Query: 276 GXRGGGPLFXWXVXGGXXXXGXXXGXXXGGXXGGGXGGXXGXGPXXG 136
G RGG GG G G GG GG GG G G G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG 55
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.46
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 119 PXXXSXPXXGPXPXXPPXPPPXXPPXXXPXSXPXXXXPPXTXQXKRGPPPRXP 277
P + P P PP PPP P P P PP + PP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAP---PVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 174 PPXXXPPXXPXXXTXGXRAPPXPXXQKGAPPPGXP 278
PP P P APP P G PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 136 PXPGPRAXXPPXPPPXPXP 192
P P P A PP PPP P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAP 1198
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = +2
Query: 119 PXXXSXPXXGPXPXXPPXPPP-XXPPXXXPXSXPXXXXPPXT 241
P P P PP PPP PP P PP T
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Frame = +2
Query: 149 PXPXXPPXPPPXXPPXXXPXS---XPXXXXPPXTXQXKRGPPPRXP 277
P P PP PPP PP S P Q PPP P
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATP 279
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 3.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 864 PPPPPXPP 887
PPPPP PP
Sbjct: 946 PPPPPPPP 953
Score = 22.2 bits (45), Expect(2) = 3.0
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 846 PXXXPXPPPPP 878
P P PPPPP
Sbjct: 942 PAFPPPPPPPP 952
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 189 PPXXPXXXTXGXRAPPXPXXQKGAPPPGXPXXXKXTG 299
PP P + + P P + APPP P TG
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 173 PPPXXPPXXXPXSXPXXXXPPXTXQXKRGPPPRXP 277
PPP P P P P GPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +2
Query: 155 PXXPPXPPPXXPPXXXPXSXPXXXXPPXTXQXKRGPPPRXP 277
P P P P PP P PP PPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Frame = +2
Query: 137 PXXGPXPXXPP-----XPPPXXPPXXXPXSXPXXXXPP 235
P P P PP PPP PP + P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Frame = +3
Query: 177 PXXXPPXXPXXXTXGXRAPPXPXXQKGA--PPPGXPXXXKXTGG 302
P P P G PP P GA PPP P GG
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 119 PXXXSXPXXGPXPXXPPXPPPXXPPXXXPXSXPXXXXPP 235
P P P PP PPP PP P PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPP--PPGVAGAGPPPPPPPP 782
Score = 23.4 bits (48), Expect(2) = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 864 PPPPPXPP 887
PPPPP PP
Sbjct: 775 PPPPPPPP 782
Score = 23.4 bits (48), Expect(2) = 6.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 864 PPPPPXPP 887
PPPPP PP
Sbjct: 776 PPPPPPPP 783
Score = 21.0 bits (42), Expect(2) = 6.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +3
Query: 846 PXXXPXPPPPPXP 884
P P P PPP P
Sbjct: 744 PAPAPIPVPPPAP 756
Score = 21.0 bits (42), Expect(2) = 6.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +3
Query: 846 PXXXPXPPPPPXP 884
P PPPPP P
Sbjct: 756 PIMGGPPPPPPPP 768
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 136 PXPGPRAXXPPXPPPXPXP 192
P P + PP PPP P P
Sbjct: 347 PTPQVQGSRPPPPPPMPAP 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,963
Number of Sequences: 5004
Number of extensions: 14214
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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