Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_N12
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 145 6e-36
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.7
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 4.8
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 8.3
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 8.3
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 8.3
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 26 8.3
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 8.3
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 145 bits (352), Expect = 6e-36
Identities = 64/106 (60%), Positives = 79/106 (74%)
Frame = +2
Query: 323 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 502
ERIPERVVHAKG+GAFG FE T DITKY+ +F +GK+TP+ RFSTVGGE G+ DT
Sbjct: 52 ERIPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTA 111
Query: 503 RDPRGFAVKFYTDDGVWDLVGNNTPIFLYKRSNIIPEFYPYSEEKP 640
RDPRGFA+KFYTD+G++D+VGNNTP+F + P F + P
Sbjct: 112 RDPRGFALKFYTDEGIFDMVGNNTPVFFLRDPAKFPLFIHTQKRNP 157
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/30 (63%), Positives = 19/30 (63%)
Frame = +3
Query: 591 RDPTLFPSFIHTQKRNPGNTF*XIPXMFWD 680
RDP FP FIHTQKRNP N MFWD
Sbjct: 141 RDPAKFPLFIHTQKRNPQNDM-KDATMFWD 169
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 205 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 321
TT +G P+ A VGK GP LLQD + +D FDR
Sbjct: 13 TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDR 51
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 524 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 399
++ E +E+Y+Q+ + SV + + W Q+L+ CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 632 LLSMDKTRE*CWISYKEKWEYYFXLNPTLHHQYRTLQQNLEG-HE-QYQQIHS 480
++ +DK C +S YYF L P H L +G HE + Q++HS
Sbjct: 767 VMKVDKETVKCSVSNNSADSYYFGLAPARFHWSGDLINIADGIHEIKLQRVHS 819
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 148 LGLLKPFCMFPSYYAAFVV*YHGATHW 68
LG+ +PF ++ +Y V YH + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 281 RMLTFLMKCHPLTGERIPERVVH 349
+ +TFL+ P G RIP VH
Sbjct: 123 KTVTFLLTAQPYNGPRIPNASVH 145
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -1
Query: 266 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGVRCLI 87
P + T ++ L+P + L V+ P + + LE I Y+PFLL G+ +
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGLMNYL 254
Query: 86 PRSDSLGAYRELNSN 42
SD + R + SN
Sbjct: 255 --SDPNESIRIVTSN 267
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 653 ECVARVSLLSMDKTRE*CWISYKEKWEY 570
EC V+L SMD + C ++YK +W Y
Sbjct: 97 ECKKTVAL-SMDSITKTCILNYKLEWTY 123
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 498 VSADPLSPPTVENLTAIGVLLPMDSNTL 415
VS +P + +NLTAIGV P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,470
Number of Sequences: 5004
Number of extensions: 68624
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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