Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_N12
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 130 2e-30
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 128 6e-30
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 122 4e-28
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 3.8
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 29 5.0
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 29 6.6
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 8.7
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 130 bits (313), Expect = 2e-30
Identities = 60/110 (54%), Positives = 75/110 (68%)
Frame = +2
Query: 323 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 502
ERIPERVVHA+GA A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+
Sbjct: 57 ERIPERVVHARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETL 116
Query: 503 RDPRGFAVKFYTDDGVWDLVGNNTPIFLYKRSNIIPEFYPYSEEKPWQHI 652
RDPRGFA+KFYT +G WDLVGNN P+F + P+ + P H+
Sbjct: 117 RDPRGFAIKFYTREGNWDLVGNNFPVFFIRDGMKFPDMVHSLKPNPKSHV 166
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 205 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 321
+T SGAPV TVG GP LL+D + ++++++FDR
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDR 56
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 128 bits (309), Expect = 6e-30
Identities = 59/110 (53%), Positives = 74/110 (67%)
Frame = +2
Query: 323 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 502
ERIPERVVHA+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+
Sbjct: 69 ERIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETI 128
Query: 503 RDPRGFAVKFYTDDGVWDLVGNNTPIFLYKRSNIIPEFYPYSEEKPWQHI 652
RDPRGFAVKFYT +G WDL+GNN P+F + P+ + P H+
Sbjct: 129 RDPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHV 178
Score = 35.9 bits (79), Expect = 0.043
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 205 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 321
TT +GAPV TVG GP LL+D + +++++ F R
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFAR 68
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 122 bits (294), Expect = 4e-28
Identities = 57/97 (58%), Positives = 71/97 (73%)
Frame = +2
Query: 323 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 502
ERIPERVVHA+GA A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+
Sbjct: 57 ERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETL 116
Query: 503 RDPRGFAVKFYTDDGVWDLVGNNTPIFLYKRSNIIPE 613
RDPRGFAVKFYT +G +DLVGNN P+F + P+
Sbjct: 117 RDPRGFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPD 153
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 199 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 321
F TT SGAPV + TVG+ GP LL+D + +++++ FDR
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDR 56
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +2
Query: 290 TFLMKCHPLTG-ERIP-ERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRF 463
T L+ CH LT E + E G YF + + V ++I ++T + R+
Sbjct: 1154 TLLIPCHSLTLLEHLQLESCFDVHFEGGMQYFTKLKKLEVHRCFDVTQNIYEQTSLVERY 1213
Query: 464 STVGGESGSADTVRDPRGFAVKFY 535
S +GG V D R ++Y
Sbjct: 1214 SLMGGLQSLIHLVIDDRFMYYRYY 1237
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 287 LTFLMKCHPLTGERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFS 466
L +L KC L+G+R +VV + G GY ++++ + F S G+ FS
Sbjct: 464 LVWLYKCRVLSGKRHQNKVVQKR--GILGYLSASNELGDENLELPFVSFGEIAAATNNFS 521
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 647 VARVSLLSMDKTRE*CWISYKEKWEYYFXLNPTLHHQYRTLQQNLE 510
V RV ++ + RE W+S ++ Y F P L H Y + N E
Sbjct: 213 VDRVKIVVSEGVRE-IWLSSEDTGAYVFAPGPDLFHNYTSQAMNRE 257
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 296 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 186
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,199,563
Number of Sequences: 37544
Number of extensions: 445988
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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