Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N11
         (946 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    33   0.33 
11_01_0411 - 3114959-3115000,3115504-3116703                           29   7.1  
11_01_0066 - 536281-537196,537397-537452                               29   7.1  
08_01_1010 - 10215625-10216335,10216372-10216473                       29   7.1  

>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 17/59 (28%), Positives = 18/59 (30%)
 Frame = +1

Query: 733 TSPXXRVNXPXPRXFXPXNXXPXAPXPXXRPXXTPSPSKXVRXXPPSSXXXPXGXXVGN 909
           T    +V  P PR   P N  P  P P   P   P P       PP     P      N
Sbjct: 329 TPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPPSVPSNN 387


>11_01_0411 - 3114959-3115000,3115504-3116703
          Length = 413

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 748 RVNXPXPRXFXPXNXXPXAPXPXXRPXXTPSPS 846
           R + P P  + P    P  P P   P   PSPS
Sbjct: 258 RASPPPPVLYLPRQAAPAVPCPPAPPLWLPSPS 290


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/56 (28%), Positives = 18/56 (32%)
 Frame = +1

Query: 703 PRSPXXXX*VTSPXXRVNXPXPRXFXPXNXXPXAPXPXXRPXXTPSPSKXVRXXPP 870
           P SP      T P    + P P    P    P        P   P P+  VR  PP
Sbjct: 212 PASPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPPPP 267


>08_01_1010 - 10215625-10216335,10216372-10216473
          Length = 270

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
 Frame = +1

Query: 664 PTLPGPLGXX*XTPRSPXXXX*VTSPXXRVNXPXPRXFXPXNXXPXAPXPXXR---PXXT 834
           PT P        TP +P       SP    + P PR   P +  P  P P  R   P  T
Sbjct: 92  PTTPRRAASPDYTPSTPTPPRRAASPDYTPSTPPPRAASP-DYTPSTPTPPRRAASPNYT 150

Query: 835 PSPSKXVRXXPPSSXXXP 888
           PS  +     P  +   P
Sbjct: 151 PSTPQRHAASPDYTPSTP 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,700
Number of Sequences: 37544
Number of extensions: 263036
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)