Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N11
         (946 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 682 GDRXALAGGNRXXIXKGXXGXDMGXXEGSRG 590
           GDR +  GG+R     G  G D G   G RG
Sbjct: 41  GDRGSFGGGDRGGFRGGRGGGDRGGFRGGRG 71


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 682 GDRXALAGGNRXXIXKGXXGXDMGXXEGSRG 590
           GDR    GG+R     G  G D G   G RG
Sbjct: 355 GDRGGFRGGDRGGFRGGDRGGDRGGFRGGRG 385


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 760 PXPRXFXPXNXXPXAPXPXXRPXXTPSPSKXVRXXPPS 873
           P P    P    P +P P   P   PSP +     PPS
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPS 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,481
Number of Sequences: 27780
Number of extensions: 187510
Number of successful extensions: 278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)