Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N10
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.88 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 517 SPPPPXXPPTLXSPXXXXXLPLPPTHXXCXPPPP 618
           S PPP  PP   +      +PLPP      PPPP
Sbjct: 335 SLPPPPPPPRSNAAGS---IPLPPQGRSAPPPPP 365


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 505  PXXXSPPPPXXPPTLXSPXXXXXLPLPPTHXXCXPPP 615
            P    PPPP  PP    P      PLP +     P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +2

Query: 488  APXHXXPXXXPPPPPXAPPLXXPXXXXXXSPSP 586
            AP    P    PPPP APP+          P P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 496  AXXPXXXSPPPPXXPPTLXSPXXXXXLPLPPTHXXCXPPPP 618
            A  P   +P PP  P ++  P     +P  P      PPPP
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS---APPPP 1734


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 517 SPPPPXXPPTLXSPXXXXXLPLPPTHXXCXPPPP 618
           SPPP   PP+  +P       LP  +    PPPP
Sbjct: 166 SPPPSFQPPSAAAP----ATSLPSDYNPPPPPPP 195



 Score = 24.6 bits (51), Expect(2) = 2.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 506 PXXXPPPPPXAPP 544
           P   PPPPP  PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 21.0 bits (42), Expect(2) = 2.6
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +2

Query: 491 PXHXXPXXXPPPPP 532
           P    P   PPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 518 PPPPPXAPPLXXPXXXXXXSPSPQ 589
           PPPPP  PP          +P+PQ
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQ 798



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 517 SPPPPXXPPTLXSPXXXXXLPLPPTHXXCXPPPP 618
           SPPPP  P  +        +P+PP       PPP
Sbjct: 731 SPPPPP-PAVIVPTPAPAPIPVPPPAPIMGGPPP 763


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 522 PPPXXPPHSXFPXXXXGAPPPP 587
           PPP  PP    P      PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 518  PPPPPXAPPLXXPXXXXXXSPS 583
            PPPPP  PPL         SP+
Sbjct: 945  PPPPPPPPPLVSAAGGKFVSPA 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,508
Number of Sequences: 5004
Number of extensions: 18745
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)