Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N09
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    30   2.7  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    30   2.7  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   3.5  
AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical ...    29   6.2  

>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = -3

Query: 705 GWGGXPNXSXXFLGGWGSPXKXPP*KGEXPGPGXXXXXXXXGXGXXXXGXGGXGG 541
           G    P      +GG G P   P   G  PG G        G      G GG GG
Sbjct: 146 GMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGG 200



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = -1

Query: 686 TXPKXFWXGGGAXXXPPXKREXPXAPGXXXGXXXXGXGGXXXGXGGXXG 540
           T P     GGG    PP     P   G   G    G  G   G GG  G
Sbjct: 152 TGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGG 200


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = -3

Query: 705 GWGGXPNXSXXFLGGWGSPXKXPP*KGEXPGPGXXXXXXXXGXGXXXXGXGGXGG 541
           G    P      +GG G P   P   G  PG G        G      G GG GG
Sbjct: 426 GMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGG 480



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = -1

Query: 686 TXPKXFWXGGGAXXXPPXKREXPXAPGXXXGXXXXGXGGXXXGXGGXXG 540
           T P     GGG    PP     P   G   G    G  G   G GG  G
Sbjct: 432 TGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGG 480


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 384 YILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPALTMP 259
           ++L L+  L   S Y +  K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical
           protein Y32G9B.1 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 784 PPLTXGNPXLSPPPXXXSPFXAXP 855
           PPLT G P   PPP    P    P
Sbjct: 102 PPLTFGTPSTPPPPATLPPMFGIP 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,852,308
Number of Sequences: 27780
Number of extensions: 320756
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)