Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N06
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical p...    39   0.004
AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.5  
Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.     29   3.3  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical
           protein R144.13 protein.
          Length = 163

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 553 LLATPMXQMFEVVSDVGSYNKFLPWCKXSIV 645
           L+     +MF+VVSDV  Y+ F+PWC+ S V
Sbjct: 8   LIGFSRDEMFKVVSDVSDYHNFVPWCRSSTV 38


>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 551 LPXSINSCFVCYWQVYKTTILLLNALA 471
           L  S+N CF  YW  YKT + +L  L+
Sbjct: 163 LSCSLNLCFYQYWTTYKTIVYILTFLS 189


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 786 PSPXXSTPLGDLVPAPXXXTPXPCVCGTPXLPP 884
           P P  S P G L P     +P P   G+P  PP
Sbjct: 301 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 786 PSPXXSTPLGDLVPAPXXXTPXPCVCGTPXLPP 884
           P P  S P G L P     +P P   G+P  PP
Sbjct: 322 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 786 PSPXXSTPLGDLVPAPXXXTPXPCVCGTPXLPP 884
           P P  S P G L P     +P P   G+P  PP
Sbjct: 307 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339


>Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical
           protein F44F4.7 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 310 VVYFNFLLFMNFQEFSSITIMHNSFILNIFSGN-SCLPIV 426
           V+    L F N  EF+  T     F LNIF+ N SC P++
Sbjct: 54  VLLIGSLFFANAHEFAYFTAPLKVFQLNIFNTNTSCYPLI 93


>AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 310 VVYFNFLLFMNFQEFSSITIMHNSFILNIFSGN-SCLPIV 426
           V+    L F N  EF+  T     F LNIF+ N SC P++
Sbjct: 54  VLLIGSLFFANAHEFAYFTAPLKVFQLNIFNTNTSCYPLI 93


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 542 SINSCFVCYWQVYKTTILLLN 480
           SIN+CF+ +W  YK  +  LN
Sbjct: 169 SINACFLKFWTSYKAIMFALN 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,609
Number of Sequences: 27780
Number of extensions: 275812
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)