Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N03
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    29   1.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   6.1  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   6.1  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   6.1  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   6.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.1  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 530 RYRRHASEDXEXLXQYNEHFLIPRDIF 610
           RY+R ASE  E L +++ HF I   +F
Sbjct: 99  RYKRDASESDELLNEFSNHFGISDPLF 125


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 281  ILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNTRDLRFLYP 460
            +LPS + D  L      +R   +   N  S++H     +I     +  HR     + + P
Sbjct: 2310 VLPSDLRDELLFQEAVQMRLFDHATRNNNSVDHEVEMEEIDQGGTVSEHRE----KSVKP 2365

Query: 461  RGKLPVPTL 487
              K+PVP L
Sbjct: 2366 VKKIPVPNL 2374


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 241 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 101
           H D  IAVPG L+ +       L  A R  G   G+K   PE  T  E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 344 TNPENNEA-SIEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFN 499
           TN   NE  S    H T+ +G D+ + +         +YP  K+   TLP  N
Sbjct: 446 TNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVN 498


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = +2

Query: 257 APSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNT 436
           AP      + P  +D   L P  +  R V N   + + I  SH      +DQ  +   NT
Sbjct: 90  APRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQISDIKHNT 143

Query: 437 RDLRFLYPRGKLPVPTLPPFNPKPI 511
            ++          +PT P  NP+P+
Sbjct: 144 SEI------SSTMIPTTPSKNPEPV 162


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 375 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGA 256
           S + SLFS       R   RF        F G++GW  +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 481  WNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM*MFNGRLVIFWI 347
            W +     + K  +P V++A     KSN N +  ++ G   + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,484
Number of Sequences: 5004
Number of extensions: 63247
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)