Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_N03
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0560 - 23288078-23288370,23288448-23288733                       29   3.7  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    29   4.9  
01_01_0206 - 1770622-1771347                                           29   4.9  
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496...    29   6.4  
05_01_0570 + 5061600-5062142,5062790-5062972                           28   8.5  

>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 251 LGAPSTADHPILPSKIDDVQLDPNRRYVRS 340
           L  P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPRPLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 260  PSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 391
            P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2067 PETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>01_01_0206 - 1770622-1771347
          Length = 241

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 452 LYPRGKL-PVPTLPPFNPKP 508
           L+  GKL PVP LPP +PKP
Sbjct: 68  LFAGGKLLPVPPLPPVHPKP 87


>11_01_0620 -
           4964263-4965052,4965578-4965663,4966332-4966413,
           4967052-4967156,4967600-4967772,4967988-4968101,
           4973939-4974037,4974320-4974398,4975424-4975492,
           4975955-4976061
          Length = 567

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 235 QGDNVPRCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK*R 363
           +G +VP  ++  +P DS F++    A++KP   S+   SR+ R
Sbjct: 525 RGSSVPTASRQTKPEDSLFKDLVDFAKNKPSSPSKPANSRRTR 567


>05_01_0570 + 5061600-5062142,5062790-5062972
          Length = 241

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 311 AARRRFSKEESDGLRYLAHRGTLSP*YSHS--GSWPA 207
           +ARRR  KEE+ G+   A R T +P  + +   SWPA
Sbjct: 170 SARRRPRKEETTGINGTARRPTSTPCPTEARLSSWPA 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,407,506
Number of Sequences: 37544
Number of extensions: 460210
Number of successful extensions: 1300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)