Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M24
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   137   2e-33
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   131   1e-31
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   1.2  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   2.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   2.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.8  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  137 bits (331), Expect = 2e-33
 Identities = 60/93 (64%), Positives = 76/93 (81%)
 Frame = +3

Query: 93  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 272
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 273 MFQLPKLYAKLHYCVSCAIHSKVCQEQIXERQK 371
            + +PKLY KL YCVSCAIHS+V + +  E ++
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRR 93



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 334 AKSVRNRSKKDRRIRTPP 387
           ++ VR RS++ RRIRTPP
Sbjct: 81  SRVVRVRSREGRRIRTPP 98


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  131 bits (317), Expect = 1e-31
 Identities = 57/93 (61%), Positives = 75/93 (80%)
 Frame = +3

Query: 93  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 272
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 273 MFQLPKLYAKLHYCVSCAIHSKVCQEQIXERQK 371
            + +PK+Y KL YCVSCAIH++V + +  E ++
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRR 93



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 334 AKSVRNRSKKDRRIRTPP 387
           A+ VR RS++ RRIRTPP
Sbjct: 81  ARVVRVRSREGRRIRTPP 98


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 174 RCVPKDKAIKKFVIRNIVEAAAVRDI 251
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 233 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 114
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 562 PGNXHXRGDAXPXXGGGXGGGGGXGXGXXGGG 467
           P     RG      GG  GG GG   G  GGG
Sbjct: 134 PAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGG 165


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -3

Query: 562 PGNXHXRGDAXPXXGGGXGGGGGXGXG---XXGGG 467
           PG+   RG +    GG  GG GG G G     GGG
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 601 GQKSXXGXYHVGDPGNXHXRGDAXPXXGGGXGGGGGXGXGXXGG 470
           G +   G    G  G    RG      GG  GGG G   G  GG
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,705
Number of Sequences: 5004
Number of extensions: 35405
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)