Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M23
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    29   0.84 
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   1.1  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    28   1.5  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   2.6  

>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 584 TYSMPPGTWRSERRE*KSWTGFQYPXVVESFL 679
           TYS PP  W S  R+ K+ T    P  V+S +
Sbjct: 612 TYSQPPPRWESSSRDDKTNTSSTQPSQVDSLV 643


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -3

Query: 429 RERYYGWSRTGSFSSYWPSSFCWSPMGSGERPSESHTKLIASPIMKRRE 283
           R +++   ++     Y+P +F ++P  +   PS S +  + SP+    E
Sbjct: 519 RNKFHKKKQSSGPFQYYPDAFSFTPTDNNSPPSNSSSSEVVSPVSLHSE 567


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 395 LPVLDQP*YLSLSLIXKXPPESRKXRAPAFTFGQKLNPLANIAKAGPGXASYNTEXMTAK 574
           L +++QP YL+       P  S     P+F+ GQK  P A   +   G    NT  ++  
Sbjct: 204 LHIVNQPTYLAPVPSATVPTNSVSLSMPSFSQGQKNIPAAINQEMSVGTTKENTNYLSQL 263

Query: 575 APNTYSMPP 601
                ++PP
Sbjct: 264 VGLHPAIPP 272


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 408 SRTGSFSSYWPSSFCWSPMGSGERPSESHTKLIASP 301
           S T   S+Y P++   SP+GS  R S  +T ++A P
Sbjct: 61  SPTSPQSAYVPATVYTSPIGSPRRGSVRYTHVMAHP 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,322
Number of Sequences: 5004
Number of extensions: 60545
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)