Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M23
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical p...    29   5.6  
AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear recep...    29   5.6  
AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear horm...    29   5.6  
AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear horm...    29   5.6  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   5.6  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   9.8  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   9.8  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   9.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   9.8  

>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 435 RERERYYGWSRTGSFSSYWPSSFCWSPMGSGER 337
           RERERY    R     SY PS++C  P+    R
Sbjct: 46  RERERYRRRDRYRLLPSYTPSTWCIEPVDKDRR 78


>Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 541 CFLQYRXNDC*STQYLFYATGYLAKRKKGVKKLDRXSVSXGRGKF 675
           C L YR +DC    Y F+ TGY +         DR  VS  + KF
Sbjct: 100 CKLLYRSSDCVVDLYFFFLTGYFSTYSVFSLTSDRL-VSHYKSKF 143


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 541 CFLQYRXNDC*STQYLFYATGYLA 612
           C L +R +DC    YL+Y TGY +
Sbjct: 99  CKLLFRSSDCVFELYLYYPTGYFS 122


>Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 541 CFLQYRXNDC*STQYLFYATGYLAKRKKGVKKLDRXSVSXGRGKF 675
           C L YR +DC    Y F+ TGY +         DR  VS  + KF
Sbjct: 100 CKLLYRSSDCVVDLYFFFLTGYFSTYSVFSLTSDRL-VSHYKSKF 143


>AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear receptor
           NHR-8 protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 500 LNPLANI--AKAGPGXASYNTEXMTAKAPNTYSMPPGTWRSERRE*KSWTGFQYPXVVES 673
           L+P++ I  A +    + YNT  +  ++P  Y++ P +  S   E       QYP ++  
Sbjct: 214 LSPMSVISCAPSSHDSSGYNTSQLVTQSPTNYTVSPASIPSSITELSPQMPSQYPPMLSP 273

Query: 674 F 676
           F
Sbjct: 274 F 274


>AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform b protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 500 LNPLANI--AKAGPGXASYNTEXMTAKAPNTYSMPPGTWRSERRE*KSWTGFQYPXVVES 673
           L+P++ I  A +    + YNT  +  ++P  Y++ P +  S   E       QYP ++  
Sbjct: 213 LSPMSVISCAPSSHDSSGYNTSQLVTQSPTNYTVSPASIPSSITELSPQMPSQYPPMLSP 272

Query: 674 F 676
           F
Sbjct: 273 F 273


>AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform a protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 500 LNPLANI--AKAGPGXASYNTEXMTAKAPNTYSMPPGTWRSERRE*KSWTGFQYPXVVES 673
           L+P++ I  A +    + YNT  +  ++P  Y++ P +  S   E       QYP ++  
Sbjct: 214 LSPMSVISCAPSSHDSSGYNTSQLVTQSPTNYTVSPASIPSSITELSPQMPSQYPPMLSP 273

Query: 674 F 676
           F
Sbjct: 274 F 274


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +2

Query: 395  LPVLDQP*YLSLSLIXKXPPESRKXRAPAFTFGQKLNPL--ANIAKAGPGXASYNTEXMT 568
            LPV   P   S S+I   PP       P     +K NPL  AN      G    +    T
Sbjct: 1374 LPVPPPPPLFSPSMILPPPP-------PPLPSEEKKNPLPTANNGHTDNGSDDIDRNVPT 1426

Query: 569  AKAPNTYSMPP 601
              + N YSMPP
Sbjct: 1427 PPSQNQYSMPP 1437


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 360  SPMGSGERPSESHTKLIASPIMKRRE*VQTSENPLSP 250
            SP    + P +S T+ I SP+ K +   +  E P SP
Sbjct: 1541 SPTKKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASP 1577


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 360  SPMGSGERPSESHTKLIASPIMKRRE*VQTSENPLSP 250
            SP    + P +S T+ I SP+ K +   +  E P SP
Sbjct: 1541 SPTKKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASP 1577


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 360  SPMGSGERPSESHTKLIASPIMKRRE*VQTSENPLSP 250
            SP    + P +S T+ I SP+ K +   +  E P SP
Sbjct: 1541 SPTKKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASP 1577


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 360  SPMGSGERPSESHTKLIASPIMKRRE*VQTSENPLSP 250
            SP    + P +S T+ I SP+ K +   +  E P SP
Sbjct: 1541 SPTKKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASP 1577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,440,799
Number of Sequences: 27780
Number of extensions: 346962
Number of successful extensions: 657
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)