Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M21
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    71   2e-13
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    27   2.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   4.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   6.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   8.0  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 29/48 (60%), Positives = 41/48 (85%)
 Frame = +2

Query: 548 FCKGFHIWFEVDDALTLLRLNDLFVESFEVKDVKTLNGDHLSXAIGRL 691
           F + F + F++DDA+ LLRL+DL++++FE+KDVKTL GDHLS AIGR+
Sbjct: 142 FVQAFALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRI 189



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 30/55 (54%), Positives = 41/55 (74%)
 Frame = +1

Query: 355 SKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETK 519
           +K  MR+V +P HR TPL+  W K++ P+VEHLLLQVR NTK+R+VE++    TK
Sbjct: 77  AKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATK 131


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 276 LFNLHTISGVICSFALYIFKLHRLFSWQKIINTY 175
           +F+++ I G+I S+ L IF++ RL S Q +  +Y
Sbjct: 27  IFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSY 60


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 684 PIAXLKWSPFRVFTSLTSNDSTNKSFSRSNV---KASSTSNHI 565
           P     W+    FTS TS+   + S+S S     K++ +SNH+
Sbjct: 199 PTTTNNWNSSSSFTSSTSSTPISSSYSSSGTLPSKSNKSSNHV 241


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 485 LVFVLNLTCSNKCSTIGVNIFSQLSLSGVYL 393
           L F L  TC  +  ++ +N F     SG+YL
Sbjct: 25  LTFFLLTTCQLRILSLSINAFCVFGASGIYL 55


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 160 METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPT 282
           ++  N   D F+P  KT  L N+      +TG+ +   EPT
Sbjct: 427 IDPSNQPSDQFIPLLKTCALCNLSTVNQTETGEWVVKGEPT 467


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 288  PNCGLFNLHTISGVICSFALYIFKL 214
            P  G+FN + I  V+  FA++I  L
Sbjct: 1051 PQAGIFNTYIIGSVLGQFAIHIVTL 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,564
Number of Sequences: 5004
Number of extensions: 54881
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)