Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M19
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   151   9e-38
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   151   9e-38
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    30   0.36 
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    26   7.7  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  151 bits (367), Expect = 9e-38
 Identities = 69/109 (63%), Positives = 84/109 (77%)
 Frame = +3

Query: 75  QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIXGTYIDKKCPFTGNVSIR 254
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 255 GRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 401
           GRILTG V    M RTI+IRR+YLH++PKYNR+ KRH+N++ H+SP FR
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +1

Query: 415 GDIVTIGECRPLSKTVRFNVL 477
           GD+VT+G+CRPLSKTVRFNVL
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVL 137


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  151 bits (367), Expect = 9e-38
 Identities = 69/109 (63%), Positives = 84/109 (77%)
 Frame = +3

Query: 75  QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIXGTYIDKKCPFTGNVSIR 254
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 255 GRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 401
           GRILTG V    M RTI+IRR+YLH++PKYNR+ KRH+N++ H+SP FR
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +1

Query: 415 GDIVTIGECRPLSKTVRFNVL 477
           GD+VT+G+CRPLSKTVRFNVL
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVL 137


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 412 IGDIVTIGECRPLSKTVRFNVL 477
           +GD VTI  CRP S T RF ++
Sbjct: 51  VGDAVTIQPCRPRSATKRFEII 72


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 90  FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIXG-TYIDKKCPFTGNVSIRGRIL 266
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 267 TGV 275
           TGV
Sbjct: 222 TGV 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,473
Number of Sequences: 5004
Number of extensions: 42887
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)