Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M19
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.7  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 342 YNRFXKRHRNMSVHLSPCFRARGXW*YCNDRRMQTFVQNS 461
           YNR+  R R + +  + C   R    +  +RRM+   +N+
Sbjct: 29  YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENA 68


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 633 IRYLDEXGHPXTXXAXETNALFVN 704
           + YL   G   T  + E+N +F+N
Sbjct: 319 LNYLKRGGKTLTSISVESNTMFIN 342


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 342 YNRFXKRHRNMSVHLSPCFRARGXW*YCNDRRMQTFVQN 458
           YNR+  R R + +  + C   R    +  +RRM+   +N
Sbjct: 291 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,636
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)