Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M17
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       42   7e-04
04_03_0649 - 18402976-18403220,18403305-18404499                       38   0.014
07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725     29   5.0  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   5.0  
04_01_0192 - 2245794-2246186,2246699-2247490                           29   6.6  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +1

Query: 442 YNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQXP 552
           ++ +   +  R AFINS + LA   GFDG+DLAW+ P
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 469 ARTAFINSGVLLAEQYGFDGIDLAWQXP 552
           +R AFI + V +A + GFDG+D+AW+ P
Sbjct: 143 SRAAFIGAAVKVARENGFDGLDVAWRFP 170


>07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725
          Length = 523

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = -1

Query: 536 RSIPSKPYCSANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPRVLGFQAGD 357
           R +P+    S  STP L++A  A    +     SG    A PP+  +T+ P  LG     
Sbjct: 21  RLLPAGHARSHGSTPALIRAAAAASSPASPRGHSGGRKPARPPSLQSTLWP--LGHPGTL 78

Query: 356 RTXXXXXXXXVPGSRLR 306
                      PG+RLR
Sbjct: 79  LVPEIERWAAKPGNRLR 95


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 590  DPQXERIFLGLTLG-NCQARSIPSKPYCSANSTPELMKAVRACCDSSRRLYFSGSSVSAS 414
            D    ++F+  +L  N + + +P       ++ P + + V++  + S R+      V+AS
Sbjct: 2381 DTIYRKVFINQSLAENFRRKFLPLSAAQGGSTRPTIGQLVQSSQEPSARIV--AEQVTAS 2438

Query: 413  PPTDNNTVRPRVL 375
            P T ++ VRP+VL
Sbjct: 2439 PVTLSSAVRPQVL 2451


>04_01_0192 - 2245794-2246186,2246699-2247490
          Length = 394

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 606 NSMPKRS-PXRADLLRLNSWXLPGEVNSIETILFSQQHSGINESSTGLLRFQQKV--IFF 436
           +S P R+    + +LR       G+ NSI TIL    HS       G+    Q++  +F+
Sbjct: 116 DSDPNRTYSLESGILRYKGRIYVGDSNSIRTILLQDYHSSAFGRHLGIRATYQRIKGLFY 175

Query: 435 W 433
           W
Sbjct: 176 W 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,003,435
Number of Sequences: 37544
Number of extensions: 488258
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)