Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M16
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    50   4e-07
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.091
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   0.43 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.89 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   2.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.7  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.3  

>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +1

Query: 178 WKRMSFFVAFPAIALGMLNAYLAH--QEEH--HERPPFVPYEYMRIRTKRXPWGDGQKSL 345
           WK++++++  PA+ L   NAY  +   +EH  H       Y +  +R K+ PWGDG K+L
Sbjct: 57  WKKVTYYIGGPALILASANAYYIYCKHQEHAKHVEDTDPGYSFENLRFKKYPWGDGSKTL 116

Query: 346 F 348
           F
Sbjct: 117 F 117


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 625 PXPXXXXPPPPXXXPPXXXXXXGAPXPP 708
           P P    PPPP   PP      G P PP
Sbjct: 754 PAPIMGGPPPP--PPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect(2) = 0.091
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 645 PPPPPPXPP 671
           PPPPPP PP
Sbjct: 775 PPPPPPPPP 783



 Score = 24.6 bits (51), Expect(2) = 0.091
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 630 PXXXXPPPPPPXP 668
           P    PPPPPP P
Sbjct: 756 PIMGGPPPPPPPP 768


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect(2) = 0.43
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 645 PPPPPPXPP 671
           PPPPPP PP
Sbjct: 945 PPPPPPPPP 953



 Score = 22.2 bits (45), Expect(2) = 0.43
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 630 PXXXXPPPPPP 662
           P    PPPPPP
Sbjct: 942 PAFPPPPPPPP 952


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 638  PXPPPPPXXXPXXXXXPXGPRXPP 709
            P PPPPP   P     P  P  PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 625  PXPXXXXPPPPXXXPPXXXXXXGAPXPP 708
            P P     PPP   PP       AP PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
 Frame = +2

Query: 626  PXXXPXP---PPPPXXXPXXXXXPXGPRXPPXXXGFXXXPNP 742
            P   P P   PPPP   P     P  P  P         PNP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 648  PPPPPXPP 671
            PPPPP PP
Sbjct: 1095 PPPPPPPP 1102



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 630  PXXXXPPPPPP 662
            P    PPPPPP
Sbjct: 1091 PSAVPPPPPPP 1101


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 630 PXXXXPPPPPPXPP 671
           P    PPPPPP PP
Sbjct: 184 PSDYNPPPPPPPPP 197


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 645 PPPPPPXPP 671
           PPPPPP PP
Sbjct: 306 PPPPPPPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 626 PXXXPXPPPPPXXXPXXXXXPXGP 697
           P   P PPPPP   P     P  P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 24/82 (29%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
 Frame = +3

Query: 645 PPPPPP-XPPXXXXXPRXXXXXXXXXXSXXPXTXKKXXPXXPXTPPXXXGXKXXXSXXTS 821
           PPPPPP   P     P              P          P  PP   G     S    
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR-SAPALPP--LGNASRTSTPPV 417

Query: 822 XTPPXLFXXPPYPPPKXXPXXP 887
            TPP L   PP  PP   P  P
Sbjct: 418 PTPPSL---PPSAPPSLPPSAP 436



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +2

Query: 626 PXXXPXPPPPPXXXPXXXXXPXGPRXPPXXXGFXXXPNP 742
           P   P PP  P   P     P  P  PP        P P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,323
Number of Sequences: 5004
Number of extensions: 45189
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)