Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M13
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.63 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.3  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   9.3  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect(2) = 0.63
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 749 LPXAXXXPPPXPPPP 793
           LP     PPP PPPP
Sbjct: 183 LPSDYNPPPPPPPPP 197



 Score = 22.6 bits (46), Expect(2) = 0.63
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 770 PPPXPPPPXRXRXPP 814
           P P PPPP     PP
Sbjct: 234 PLPAPPPPPPPTLPP 248


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 409 GGGXXGERGXGXXXARG--GGXXXAXXFRGG 323
           GGG  G RG G   ARG  GG   A   RGG
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
 Frame = +3

Query: 252 PPPXXGGXSPXPNXRXTXXVXRAXPPLX*XAXXXPPPLAKXXP---XPLSPXXPPP 410
           PPP      P P+ +         PP    A    PP A   P    P+ P  PPP
Sbjct: 150 PPPSPASAPPIPS-KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 770 PPPXPPPPXRXRXPPXXG 823
           PPP PPP  R R  P  G
Sbjct: 311 PPPPPPPSRRNRGKPPIG 328


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
 Frame = +2

Query: 749 LPXAXXXPPPXPP---PPXRXRXPPXXG 823
           LP     PPP PP   PP +   PP  G
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
 Frame = +2

Query: 251 SXXPXG-GXVPXPXXXXHXXGXPGAPXPKXXXXXXPXPPXXXSAAPPFXPXXP 406
           S  P G G V  P         P  P P       P PP   S+  P  P  P
Sbjct: 709 SMSPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,070,249
Number of Sequences: 5004
Number of extensions: 9929
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)