Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_M12
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0515 - 3864796-3865425 26 0.81
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 30 3.0
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 26 3.3
04_04_0679 + 27214577-27215023 29 4.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 4.3
06_03_0790 - 24636805-24637770 29 6.9
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 29 6.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 25 7.7
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 9.2
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 28 9.2
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 28 9.2
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 9.2
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 23 9.9
>03_01_0515 - 3864796-3865425
Length = 209
Score = 26.2 bits (55), Expect(2) = 0.81
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 650 PPARXRCXXSXGPPPLPXPXXXLVXSXPP 736
PP S PPPLP P S PP
Sbjct: 73 PPPPPSVTSSPPPPPLPPPPPPPAASPPP 101
Score = 24.2 bits (50), Expect(2) = 0.81
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFP 889
P P A PPPP P P
Sbjct: 93 PPPAASPPPPPPSPPPPSP 111
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 29.9 bits (64), Expect = 3.0
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = -3
Query: 277 TFWMMEPLPWLSYS----KL*RTALVVVAGEDAVVQFLLEVLVRSVR-G*FNDARAGGEH 113
TFW+ +PWL Y+ K R + +V +A + E+L R G + RA +
Sbjct: 193 TFWIAHHMPWLFYAWFNQKWFRISPIVEGKPEAFTEKDWEILAEIQRTGQLDRGRATKQG 252
Query: 112 AHRKIQARSFILLGAFQ 62
A+ + + IL GA++
Sbjct: 253 AYHSLCRDATILFGAWE 269
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 26.2 bits (55), Expect(2) = 3.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFPGLSPT 904
P PPA PPP + G+ PT
Sbjct: 81 PPPPAPLPPPSRRSAPRAQGVDPT 104
Score = 21.8 bits (44), Expect(2) = 3.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 650 PPARXRCXXSXGPPPLPXPXXXLVXSXPP 736
PP+ + S PPP P P L PP
Sbjct: 58 PPSPPKA--SPTPPPQPQPHPQLQPPPPP 84
>04_04_0679 + 27214577-27215023
Length = 148
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -1
Query: 927 GLWPGXXMVGXSPGNXA--XGFXGGGGXXAGGVG 832
G W SPG A GF GGGG GGVG
Sbjct: 49 GGWGYGHSSAQSPGGTAFGFGFGGGGGGGGGGVG 82
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 26.2 bits (55), Expect(2) = 4.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFPGLSP 901
P+PP PPPP P P P
Sbjct: 600 PSPPPPPPPPPILPNRSVPPPPP 622
Score = 21.4 bits (43), Expect(2) = 4.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 650 PPARXRCXXSXGPPPLPXPXXXLVXS 727
PP+ + S PPP P P L S
Sbjct: 553 PPSGNKPAFSPPPPPPPPPPPPLPQS 578
>06_03_0790 - 24636805-24637770
Length = 321
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 927 GLWPGXXMVGXSPGNXAXGFXGGGGXXAGGVG 832
G+W G G G G GGGG GG G
Sbjct: 78 GVWSGGGGGGGGGGGGGGGGGGGGGGGGGGGG 109
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFPGLSPTX*XPGHN 925
PTPP PPPP P + P + P H+
Sbjct: 22 PTPPLP-PPPPPPPPSQLPATAAATDEPSHD 51
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 25.4 bits (53), Expect(2) = 7.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFP 889
P+PP PPPP P P
Sbjct: 114 PSPPPSAPPPPPPPPTQPP 132
Score = 21.4 bits (43), Expect(2) = 7.7
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 650 PPARXRCXXSXGPPPLPXPXXXLVXSXPP 736
PP S PPP P P S PP
Sbjct: 94 PPPPPYGVNSSQPPPPPPPPPSPPPSAPP 122
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFPGLSPTX*XPG 919
P+P + PPP +P A SPT PG
Sbjct: 18 PSPSSSSAPPPKRPKAEAAPASPTASVPG 46
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFPGLSPT 904
P P PPPP P P LSPT
Sbjct: 76 PQTPPSPPPPPPPPPPPPPPLSPT 99
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 833 PTPPAXXPPPPXKPXAXFPGLSPTX*XPG 919
P P PPPP KP P L PT PG
Sbjct: 52 PPPYCVYPPPPTKPALPAP-LPPTPASPG 79
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 187 QQHPHRRLRPVLSVXAWNMRAKARAP 264
QQ P R L AWNMR AR+P
Sbjct: 188 QQQPTARAAAHLGETAWNMRGVARSP 213
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 23.4 bits (48), Expect(2) = 9.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 839 PPAXXPPPPXKPXA 880
PP PPPP P A
Sbjct: 211 PPPSPPPPPPSPAA 224
Score = 23.0 bits (47), Expect(2) = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 833 PTPPAXXPPPP 865
P+PP PPPP
Sbjct: 208 PSPPPPSPPPP 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,450
Number of Sequences: 37544
Number of extensions: 343933
Number of successful extensions: 3130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2743
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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