Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_M11
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 95 1e-20
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 89 8e-19
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.17
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 2.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 2.1
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 2.8
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 3.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 6.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 8.6
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 8.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 8.6
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 95.1 bits (226), Expect = 1e-20
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +2
Query: 230 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 403
P KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 404 LRFNTRVRFEERYKSGKNKWFFQKLRF 484
R + FEE+Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 68.9 bits (161), Expect = 9e-13
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +1
Query: 82 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRESAQEDG 255
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP + + G
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 89.0 bits (211), Expect = 8e-19
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +2
Query: 230 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 403
P KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 404 LRFNTRVRFEERYKSGKNKWFFQKLRF 484
+ + FEE+Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 72.5 bits (170), Expect = 8e-14
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = +1
Query: 82 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRESAQEDG 255
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP + + G
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.17
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 73 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 174
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 254 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 388
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 117 QHYFTRLHYFAHLGGIFPLLVD 52
Q YFT ++ F G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 88 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 171
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 197 GMPSSLVSTGTPGKVHKRMGKNKIHKRSKIK 289
G P+SLVS+ T K+H +G+ I K S+++
Sbjct: 184 GSPTSLVSSNTASKLH--LGRKDIVKLSELR 212
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 188 LSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGYSLY 60
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 385 VFQVFCAKFFKAEVNCITCWHQVIVVYNLDERLY 284
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 167 TTKVPPTSHTGMPSSLVSTGTPGKVH 244
TT VPPT+H +S V T T +H
Sbjct: 143 TTVVPPTTHAN-TTSFVPTTTESSIH 167
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 158 SRITTKVPPTSHTGMPSSLVSTGT 229
SR+ T +PP S + +P+ +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,250
Number of Sequences: 5004
Number of extensions: 52823
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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