Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_M11
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 112 4e-25
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 112 4e-25
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 1.5
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 3.5
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 112 bits (269), Expect = 4e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +2
Query: 230 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 403
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 404 LRFNTRVRFEERYKSGKNKWFFQKLRF 484
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 91.5 bits (217), Expect = 8e-19
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +1
Query: 82 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRESAQEDGKE 261
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 112 bits (269), Expect = 4e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +2
Query: 230 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 403
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 404 LRFNTRVRFEERYKSGKNKWFFQKLRF 484
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 91.5 bits (217), Expect = 8e-19
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +1
Query: 82 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRESAQEDGKE 261
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 112 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRESAQEDGKE*NPQEVQDKA 291
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 292 FRQGCKL 312
RQG L
Sbjct: 231 IRQGNSL 237
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 112 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRESAQEDGKE*NPQEVQDKA 291
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 292 FRQGCKL 312
RQG L
Sbjct: 231 IRQGNSL 237
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 112 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRESAQEDGKE*NPQEVQDKA 291
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 292 FRQGCKL 312
RQG L
Sbjct: 231 IRQGNSL 237
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 88 KIMKPGKVVLVLSGRYAGRKAIVVK 162
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 303 TLTKGFILDLLWILFFPILLCTFP 232
TL K I L WI+F +L+C FP
Sbjct: 102 TLPKFVIGSLTWIVFILVLICFFP 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,296
Number of Sequences: 27780
Number of extensions: 344306
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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